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Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager.
PeerJ. 2021 Mar 16;9:e10947. doi: 10.7717/peerj.10947. eCollection 2021.
PeerJ. 2021.
PMID: 33777521
Free PMC article.
The nf-core framework for community-curated bioinformatics pipelines.
Ewels PA, Peltzer A, Fillinger S, Patel H, Alneberg J, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S.
Ewels PA, et al. Among authors: garcia mu.
Nat Biotechnol. 2020 Mar;38(3):276-278. doi: 10.1038/s41587-020-0439-x.
Nat Biotechnol. 2020.
PMID: 32055031
No abstract available.
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Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants.
Garcia M, Juhos S, Larsson M, Olason PI, Martin M, Eisfeldt J, DiLorenzo S, Sandgren J, Díaz De Ståhl T, Ewels P, Wirta V, Nistér M, Käller M, Nystedt B.
Garcia M, et al.
F1000Res. 2020 Jan 29;9:63. doi: 10.12688/f1000research.16665.2. eCollection 2020.
F1000Res. 2020.
PMID: 32269765
Free PMC article.
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Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery.
Hanssen F, Garcia MU, Folkersen L, Pedersen AS, Lescai F, Jodoin S, Miller E, Seybold M, Wacker O, Smith N, Gabernet G, Nahnsen S.
Hanssen F, et al. Among authors: garcia mu.
NAR Genom Bioinform. 2024 Apr 25;6(2):lqae031. doi: 10.1093/nargab/lqae031. eCollection 2024 Jun.
NAR Genom Bioinform. 2024.
PMID: 38666213
Free PMC article.
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Cactus: A user-friendly and reproducible ATAC-Seq and mRNA-Seq analysis pipeline for data preprocessing, differential analysis, and enrichment analysis.
Salignon J, Millan-Ariño L, Garcia MU, Riedel CG.
Salignon J, et al. Among authors: garcia mu.
Genomics. 2024 May 11;116(4):110858. doi: 10.1016/j.ygeno.2024.110858. Online ahead of print.
Genomics. 2024.
PMID: 38735595
Free article.
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The Swedish childhood tumor biobank: systematic collection and molecular characterization of all pediatric CNS and other solid tumors in Sweden.
Díaz de Ståhl T, Shamikh A, Mayrhofer M, Juhos S, Basmaci E, Prochazka G, Garcia M, Somarajan PR, Zielinska-Chomej K, Illies C, Øra I, Siesjö P, Sandström PE, Stenman J, Sabel M, Gustavsson B, Kogner P, Pfeifer S, Ljungman G, Sandgren J, Nistér M.
Díaz de Ståhl T, et al.
J Transl Med. 2023 May 23;21(1):342. doi: 10.1186/s12967-023-04178-4.
J Transl Med. 2023.
PMID: 37221626
Free PMC article.
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Glycosylation controls sodium-calcium exchanger 3 sub-cellular localization during cell cycle.
Liu T, Zhao J, Ibarra C, Garcia MU, Uhlén P, Nistér M.
Liu T, et al. Among authors: garcia mu.
Eur J Cell Biol. 2018 Apr;97(3):190-203. doi: 10.1016/j.ejcb.2018.02.004. Epub 2018 Feb 28.
Eur J Cell Biol. 2018.
PMID: 29526322
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