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An objective comparison of detection and segmentation algorithms for artefacts in clinical endoscopy.
Ali S, Zhou F, Braden B, Bailey A, Yang S, Cheng G, Zhang P, Li X, Kayser M, Soberanis-Mukul RD, Albarqouni S, Wang X, Wang C, Watanabe S, Oksuz I, Ning Q, Yang S, Khan MA, Gao XW, Realdon S, Loshchenov M, Schnabel JA, East JE, Wagnieres G, Loschenov VB, Grisan E, Daul C, Blondel W, Rittscher J. Ali S, et al. Sci Rep. 2020 Feb 17;10(1):2748. doi: 10.1038/s41598-020-59413-5. Sci Rep. 2020. PMID: 32066744 Free PMC article.
Deep learning for detection and segmentation of artefact and disease instances in gastrointestinal endoscopy.
Ali S, Dmitrieva M, Ghatwary N, Bano S, Polat G, Temizel A, Krenzer A, Hekalo A, Guo YB, Matuszewski B, Gridach M, Voiculescu I, Yoganand V, Chavan A, Raj A, Nguyen NT, Tran DQ, Huynh LD, Boutry N, Rezvy S, Chen H, Choi YH, Subramanian A, Balasubramanian V, Gao XW, Hu H, Liao Y, Stoyanov D, Daul C, Realdon S, Cannizzaro R, Lamarque D, Tran-Nguyen T, Bailey A, Braden B, East JE, Rittscher J. Ali S, et al. Med Image Anal. 2021 May;70:102002. doi: 10.1016/j.media.2021.102002. Epub 2021 Feb 17. Med Image Anal. 2021. PMID: 33657508 Free article.
A comprehensive analysis of classification methods in gastrointestinal endoscopy imaging.
Jha D, Ali S, Hicks S, Thambawita V, Borgli H, Smedsrud PH, de Lange T, Pogorelov K, Wang X, Harzig P, Tran MT, Meng W, Hoang TH, Dias D, Ko TH, Agrawal T, Ostroukhova O, Khan Z, Atif Tahir M, Liu Y, Chang Y, Kirkerød M, Johansen D, Lux M, Johansen HD, Riegler MA, Halvorsen P. Jha D, et al. Among authors: ali s. Med Image Anal. 2021 May;70:102007. doi: 10.1016/j.media.2021.102007. Epub 2021 Feb 19. Med Image Anal. 2021. PMID: 33740740 Free article.
MSRF-Net: A Multi-Scale Residual Fusion Network for Biomedical Image Segmentation.
Srivastava A, Jha D, Chanda S, Pal U, Johansen H, Johansen D, Riegler M, Ali S, Halvorsen P. Srivastava A, et al. Among authors: ali s. IEEE J Biomed Health Inform. 2022 May;26(5):2252-2263. doi: 10.1109/JBHI.2021.3138024. Epub 2022 May 5. IEEE J Biomed Health Inform. 2022. PMID: 34941539 Free article.
FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation.
Tomar NK, Jha D, Riegler MA, Johansen HD, Johansen D, Rittscher J, Halvorsen P, Ali S. Tomar NK, et al. Among authors: ali s. IEEE Trans Neural Netw Learn Syst. 2023 Nov;34(11):9375-9388. doi: 10.1109/TNNLS.2022.3159394. Epub 2023 Oct 27. IEEE Trans Neural Netw Learn Syst. 2023. PMID: 35333723 Free article.
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