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FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations.
Bioinformatics. 2021 Sep 29;37(18):3038-3040. doi: 10.1093/bioinformatics/btab176.
Bioinformatics. 2021.
PMID: 33720293
Local frustration around enzyme active sites.
Freiberger MI, Guzovsky AB, Wolynes PG, Parra RG, Ferreiro DU.
Freiberger MI, et al.
Proc Natl Acad Sci U S A. 2019 Mar 5;116(10):4037-4043. doi: 10.1073/pnas.1819859116. Epub 2019 Feb 14.
Proc Natl Acad Sci U S A. 2019.
PMID: 30765513
Free PMC article.
Item in Clipboard
Large Ankyrin repeat proteins are formed with similar and energetically favorable units.
Galpern EA, Freiberger MI, Ferreiro DU.
Galpern EA, et al. Among authors: freiberger mi.
PLoS One. 2020 Jun 24;15(6):e0233865. doi: 10.1371/journal.pone.0233865. eCollection 2020.
PLoS One. 2020.
PMID: 32579546
Free PMC article.
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Fuzziness and Frustration in the Energy Landscape of Protein Folding, Function, and Assembly.
Gianni S, Freiberger MI, Jemth P, Ferreiro DU, Wolynes PG, Fuxreiter M.
Gianni S, et al. Among authors: freiberger mi.
Acc Chem Res. 2021 Mar 2;54(5):1251-1259. doi: 10.1021/acs.accounts.0c00813. Epub 2021 Feb 8.
Acc Chem Res. 2021.
PMID: 33550810
Free PMC article.
Review.
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Frustration in Fuzzy Protein Complexes Leads to Interaction Versatility.
Freiberger MI, Wolynes PG, Ferreiro DU, Fuxreiter M.
Freiberger MI, et al.
J Phys Chem B. 2021 Mar 18;125(10):2513-2520. doi: 10.1021/acs.jpcb.0c11068. Epub 2021 Mar 5.
J Phys Chem B. 2021.
PMID: 33667107
Free PMC article.
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Local energetic frustration conservation in protein families and superfamilies.
Freiberger MI, Ruiz-Serra V, Pontes C, Romero-Durana M, Galaz-Davison P, Ramírez-Sarmiento CA, Schuster CD, Marti MA, Wolynes PG, Ferreiro DU, Parra RG, Valencia A.
Freiberger MI, et al.
Nat Commun. 2023 Dec 16;14(1):8379. doi: 10.1038/s41467-023-43801-2.
Nat Commun. 2023.
PMID: 38104123
Free PMC article.
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Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.
Parra RG, Freiberger MI, Poley-Gil M, Fernandez-Martin M, Radusky LG, Ruiz-Serra V, Wolynes PG, Ferreiro DU, Valencia A.
Parra RG, et al. Among authors: freiberger mi.
Nucleic Acids Res. 2024 Apr 8:gkae244. doi: 10.1093/nar/gkae244. Online ahead of print.
Nucleic Acids Res. 2024.
PMID: 38587198
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An in silico analysis of Ibuprofen enantiomers in high concentrations of sodium chloride with SARS-CoV-2 main protease.
Clemente CM, Freiberger MI, Ravetti S, Beltramo DM, Garro AG.
Clemente CM, et al. Among authors: freiberger mi.
J Biomol Struct Dyn. 2022 Aug;40(12):5653-5664. doi: 10.1080/07391102.2021.1872420. Epub 2021 Jan 18.
J Biomol Struct Dyn. 2022.
PMID: 33459192
Free PMC article.
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