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A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic.
Holden MT, Hsu LY, Kurt K, Weinert LA, Mather AE, Harris SR, Strommenger B, Layer F, Witte W, de Lencastre H, Skov R, Westh H, Zemlicková H, Coombs G, Kearns AM, Hill RL, Edgeworth J, Gould I, Gant V, Cooke J, Edwards GF, McAdam PR, Templeton KE, McCann A, Zhou Z, Castillo-Ramírez S, Feil EJ, Hudson LO, Enright MC, Balloux F, Aanensen DM, Spratt BG, Fitzgerald JR, Parkhill J, Achtman M, Bentley SD, Nübel U. Holden MT, et al. Among authors: aanensen dm. Genome Res. 2013 Apr;23(4):653-64. doi: 10.1101/gr.147710.112. Epub 2013 Jan 8. Genome Res. 2013. PMID: 23299977 Free PMC article.
Species Mash-up.
Argimón S, Aanensen DM. Argimón S, et al. Among authors: aanensen dm. Nat Rev Microbiol. 2016 Nov 11;14(12):730. doi: 10.1038/nrmicro.2016.175. Nat Rev Microbiol. 2016. PMID: 27833107 No abstract available.
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography.
Argimón S, Abudahab K, Goater RJE, Fedosejev A, Bhai J, Glasner C, Feil EJ, Holden MTG, Yeats CA, Grundmann H, Spratt BG, Aanensen DM. Argimón S, et al. Among authors: aanensen dm. Microb Genom. 2016 Nov 30;2(11):e000093. doi: 10.1099/mgen.0.000093. eCollection 2016 Nov. Microb Genom. 2016. PMID: 28348833 Free PMC article.
Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey.
Harris SR, Cole MJ, Spiteri G, Sánchez-Busó L, Golparian D, Jacobsson S, Goater R, Abudahab K, Yeats CA, Bercot B, Borrego MJ, Crowley B, Stefanelli P, Tripodo F, Abad R, Aanensen DM, Unemo M; Euro-GASP study group. Harris SR, et al. Among authors: aanensen dm. Lancet Infect Dis. 2018 Jul;18(7):758-768. doi: 10.1016/S1473-3099(18)30225-1. Epub 2018 May 15. Lancet Infect Dis. 2018. PMID: 29776807 Free PMC article.
The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa.
Park SE, Pham DT, Boinett C, Wong VK, Pak GD, Panzner U, Espinoza LMC, von Kalckreuth V, Im J, Schütt-Gerowitt H, Crump JA, Breiman RF, Adu-Sarkodie Y, Owusu-Dabo E, Rakotozandrindrainy R, Soura AB, Aseffa A, Gasmelseed N, Keddy KH, May J, Sow AG, Aaby P, Biggs HM, Hertz JT, Montgomery JM, Cosmas L, Olack B, Fields B, Sarpong N, Razafindrabe TJL, Raminosoa TM, Kabore LP, Sampo E, Teferi M, Yeshitela B, El Tayeb MA, Sooka A, Meyer CG, Krumkamp R, Dekker DM, Jaeger A, Poppert S, Tall A, Niang A, Bjerregaard-Andersen M, Løfberg SV, Seo HJ, Jeon HJ, Deerin JF, Park J, Konings F, Ali M, Clemens JD, Hughes P, Sendagala JN, Vudriko T, Downing R, Ikumapayi UN, Mackenzie GA, Obaro S, Argimon S, Aanensen DM, Page A, Keane JA, Duchene S, Dyson Z, Holt KE, Dougan G, Marks F, Baker S. Park SE, et al. Among authors: aanensen dm. Nat Commun. 2018 Nov 30;9(1):5094. doi: 10.1038/s41467-018-07370-z. Nat Commun. 2018. PMID: 30504848 Free PMC article.
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread.
David S, Reuter S, Harris SR, Glasner C, Feltwell T, Argimon S, Abudahab K, Goater R, Giani T, Errico G, Aspbury M, Sjunnebo S; EuSCAPE Working Group; ESGEM Study Group; Feil EJ, Rossolini GM, Aanensen DM, Grundmann H. David S, et al. Among authors: aanensen dm. Nat Microbiol. 2019 Nov;4(11):1919-1929. doi: 10.1038/s41564-019-0492-8. Epub 2019 Jul 29. Nat Microbiol. 2019. PMID: 31358985 Free PMC article.
Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines.
Argimón S, Masim MAL, Gayeta JM, Lagrada ML, Macaranas PKV, Cohen V, Limas MT, Espiritu HO, Palarca JC, Chilam J, Jamoralin MC Jr, Villamin AS, Borlasa JB, Olorosa AM, Hernandez LFT, Boehme KD, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Stelling J, Holden MTG, Aanensen DM, Carlos CC. Argimón S, et al. Among authors: aanensen dm. Nat Commun. 2020 Jun 1;11(1):2719. doi: 10.1038/s41467-020-16322-5. Nat Commun. 2020. PMID: 32483195 Free PMC article.
Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae.
David S, Cohen V, Reuter S, Sheppard AE, Giani T, Parkhill J; European Survey of Carbapenemase-Producing Enterobacteriaceae (EuSCAPE) Working Group; ESCMID Study Group for Epidemiological Markers (ESGEM); Rossolini GM, Feil EJ, Grundmann H, Aanensen DM. David S, et al. Among authors: aanensen dm. Proc Natl Acad Sci U S A. 2020 Oct 6;117(40):25043-25054. doi: 10.1073/pnas.2003407117. Epub 2020 Sep 23. Proc Natl Acad Sci U S A. 2020. PMID: 32968015 Free PMC article.
The changing epidemiology of carbapenemase-producing Klebsiella pneumoniae in Italy: toward polyclonal evolution with emergence of high-risk lineages.
Di Pilato V, Errico G, Monaco M, Giani T, Del Grosso M, Antonelli A, David S, Lindh E, Camilli R, Aanensen DM, Rossolini GM, Pantosti A; AR-ISS Laboratory Study Group on carbapenemase-producing Klebsiella pneumoniae. Di Pilato V, et al. Among authors: aanensen dm. J Antimicrob Chemother. 2021 Jan 19;76(2):355-361. doi: 10.1093/jac/dkaa431. J Antimicrob Chemother. 2021. PMID: 33188415
153 results