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Pepitope: epitope mapping from affinity-selected peptides.
Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund NT, Bublil EM, Ruppin E, Sharan R, Gershoni JM, Martz E, Pupko T. Mayrose I, et al. Among authors: pupko t. Bioinformatics. 2007 Dec 1;23(23):3244-6. doi: 10.1093/bioinformatics/btm493. Epub 2007 Oct 31. Bioinformatics. 2007. PMID: 17977889 Free PMC article.
Computational characterization of B-cell epitopes.
Rubinstein ND, Mayrose I, Halperin D, Yekutieli D, Gershoni JM, Pupko T. Rubinstein ND, et al. Among authors: pupko t. Mol Immunol. 2008 Jul;45(12):3477-89. doi: 10.1016/j.molimm.2007.10.016. Epub 2007 Nov 26. Mol Immunol. 2008. PMID: 18023478
A machine-learning approach for predicting B-cell epitopes.
Rubinstein ND, Mayrose I, Pupko T. Rubinstein ND, et al. Among authors: pupko t. Mol Immunol. 2009 Feb;46(5):840-7. doi: 10.1016/j.molimm.2008.09.009. Epub 2008 Oct 22. Mol Immunol. 2009. PMID: 18947876
GUIDANCE: a web server for assessing alignment confidence scores.
Penn O, Privman E, Ashkenazy H, Landan G, Graur D, Pupko T. Penn O, et al. Among authors: pupko t. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W23-8. doi: 10.1093/nar/gkq443. Epub 2010 May 23. Nucleic Acids Res. 2010. PMID: 20497997 Free PMC article.
GLOOME: gain loss mapping engine.
Cohen O, Ashkenazy H, Belinky F, Huchon D, Pupko T. Cohen O, et al. Among authors: pupko t. Bioinformatics. 2010 Nov 15;26(22):2914-5. doi: 10.1093/bioinformatics/btq549. Epub 2010 Sep 27. Bioinformatics. 2010. PMID: 20876605
FastML: a web server for probabilistic reconstruction of ancestral sequences.
Ashkenazy H, Penn O, Doron-Faigenboim A, Cohen O, Cannarozzi G, Zomer O, Pupko T. Ashkenazy H, et al. Among authors: pupko t. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W580-4. doi: 10.1093/nar/gks498. Epub 2012 May 31. Nucleic Acids Res. 2012. PMID: 22661579 Free PMC article.
133 results