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Inferring Indel Parameters using a Simulation-based Approach.
Levy Karin E, Rabin A, Ashkenazy H, Shkedy D, Avram O, Cartwright RA, Pupko T. Levy Karin E, et al. Among authors: avram o. Genome Biol Evol. 2015 Nov 3;7(12):3226-38. doi: 10.1093/gbe/evv212. Genome Biol Evol. 2015. PMID: 26537226 Free PMC article.
Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations.
McNally A, Oren Y, Kelly D, Pascoe B, Dunn S, Sreecharan T, Vehkala M, Välimäki N, Prentice MB, Ashour A, Avram O, Pupko T, Dobrindt U, Literak I, Guenther S, Schaufler K, Wieler LH, Zhiyong Z, Sheppard SK, McInerney JO, Corander J. McNally A, et al. Among authors: avram o. PLoS Genet. 2016 Sep 12;12(9):e1006280. doi: 10.1371/journal.pgen.1006280. eCollection 2016 Sep. PLoS Genet. 2016. PMID: 27618184 Free PMC article.
PASA: Proteomic analysis of serum antibodies web server.
Avram O, Kigel A, Vaisman-Mentesh A, Kligsberg S, Rosenstein S, Dror Y, Pupko T, Wine Y. Avram O, et al. PLoS Comput Biol. 2021 Jan 25;17(1):e1008607. doi: 10.1371/journal.pcbi.1008607. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33493161 Free PMC article.
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