Arold ST - Search Results

1

QAUST: Protein Function Prediction Using Structure Similarity, Protein Interaction, and Functional Motifs.

Smaili FZ, Tian S, Roy A, Alazmi M, Arold ST, Mukherjee S, Hefty PS, Chen W, Gao X. Smaili FZ, et al. Among authors: arold st. Genomics Proteomics Bioinformatics. 2021 Dec;19(6):998-1011. doi: 10.1016/j.gpb.2021.02.001. Epub 2021 Feb 23. Genomics Proteomics Bioinformatics. 2021. PMID: 33631427 Free PMC article.

2

How to find a leucine in a haystack? Structure, ligand recognition and regulation of leucine-aspartic acid (LD) motifs.

Alam T, Alazmi M, Gao X, Arold ST. Alam T, et al. Among authors: arold st. Biochem J. 2014 Jun 15;460(3):317-29. doi: 10.1042/BJ20140298. Biochem J. 2014. PMID: 24870021 Review.

3

An integrated structure- and system-based framework to identify new targets of metabolites and known drugs.

Naveed H, Hameed US, Harrus D, Bourguet W, Arold ST, Gao X. Naveed H, et al. Among authors: arold st. Bioinformatics. 2015 Dec 15;31(24):3922-9. doi: 10.1093/bioinformatics/btv477. Epub 2015 Aug 18. Bioinformatics. 2015. PMID: 26286808 Free PMC article.

4

Beyond initiation-limited translational bursting: the effects of burst size distributions on the stability of gene expression.

Kuwahara H, Arold ST, Gao X. Kuwahara H, et al. Among authors: arold st. Integr Biol (Camb). 2015 Dec;7(12):1622-32. doi: 10.1039/c5ib00107b. Epub 2015 Nov 13. Integr Biol (Camb). 2015. PMID: 26566069

5

In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria.

Motwalli O, Essack M, Jankovic BR, Ji B, Liu X, Ansari HR, Hoehndorf R, Gao X, Arold ST, Mineta K, Archer JA, Gojobori T, Mijakovic I, Bajic VB. Motwalli O, et al. Among authors: arold st. BMC Genomics. 2017 Jan 5;18(1):33. doi: 10.1186/s12864-016-3389-4. BMC Genomics. 2017. PMID: 28056772 Free PMC article.

6

In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.

Othoum G, Bougouffa S, Razali R, Bokhari A, Alamoudi S, Antunes A, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Lafi FF, Essack M. Othoum G, et al. Among authors: arold st. BMC Genomics. 2018 May 22;19(1):382. doi: 10.1186/s12864-018-4796-5. BMC Genomics. 2018. PMID: 29788916 Free PMC article.

7

H-NS uses an autoinhibitory conformational switch for environment-controlled gene silencing.

Shahul Hameed UF, Liao C, Radhakrishnan AK, Huser F, Aljedani SS, Zhao X, Momin AA, Melo FA, Guo X, Brooks C, Li Y, Cui X, Gao X, Ladbury JE, Jaremko Ł, Jaremko M, Li J, Arold ST. Shahul Hameed UF, et al. Among authors: arold st. Nucleic Acids Res. 2019 Mar 18;47(5):2666-2680. doi: 10.1093/nar/gky1299. Nucleic Acids Res. 2019. PMID: 30597093 Free PMC article.

8

Proteome-level assessment of origin, prevalence and function of leucine-aspartic acid (LD) motifs.

Alam T, Alazmi M, Naser R, Huser F, Momin AA, Astro V, Hong S, Walkiewicz KW, Canlas CG, Huser R, Ali AJ, Merzaban J, Adamo A, Jaremko M, Jaremko Ł, Bajic VB, Gao X, Arold ST. Alam T, et al. Among authors: arold st. Bioinformatics. 2020 Feb 15;36(4):1121-1128. doi: 10.1093/bioinformatics/btz703. Bioinformatics. 2020. PMID: 31584626 Free PMC article.

9

Identifying Novel Drug Targets by iDTPnd: A Case Study of Kinase Inhibitors.

Naveed H, Reglin C, Schubert T, Gao X, Arold ST, Maitland ML. Naveed H, et al. Among authors: arold st. Genomics Proteomics Bioinformatics. 2021 Dec;19(6):986-997. doi: 10.1016/j.gpb.2020.05.006. Epub 2021 Mar 29. Genomics Proteomics Bioinformatics. 2021. PMID: 33794377 Free PMC article.

10

Leveraging AI Advances and Online Tools for Structure-Based Variant Analysis.

Guzmán-Vega FJ, González-Álvarez AC, Peña-Guerra KA, Cardona-Londoño KJ, Arold ST. Guzmán-Vega FJ, et al. Among authors: arold st. Curr Protoc. 2023 Aug;3(8):e857. doi: 10.1002/cpz1.857. Curr Protoc. 2023. PMID: 37540795

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