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Analysis of recurrently protected genomic regions in cell-free DNA found in urine.
Markus H, Zhao J, Contente-Cuomo T, Stephens MD, Raupach E, Odenheimer-Bergman A, Connor S, McDonald BR, Moore B, Hutchins E, McGilvrey M, de la Maza MC, Van Keuren-Jensen K, Pirrotte P, Goel A, Becerra C, Von Hoff DD, Celinski SA, Hingorani P, Murtaza M. Markus H, et al. Among authors: contente cuomo t. Sci Transl Med. 2021 Feb 17;13(581):eaaz3088. doi: 10.1126/scitranslmed.aaz3088. Sci Transl Med. 2021. PMID: 33597261 Free PMC article.
Evaluation of pre-analytical factors affecting plasma DNA analysis.
Markus H, Contente-Cuomo T, Farooq M, Liang WS, Borad MJ, Sivakumar S, Gollins S, Tran NL, Dhruv HD, Berens ME, Bryce A, Sekulic A, Ribas A, Trent JM, LoRusso PM, Murtaza M. Markus H, et al. Among authors: contente cuomo t. Sci Rep. 2018 May 9;8(1):7375. doi: 10.1038/s41598-018-25810-0. Sci Rep. 2018. PMID: 29743667 Free PMC article.
The Genomic and Immune Landscapes of Lethal Metastatic Breast Cancer.
De Mattos-Arruda L, Sammut SJ, Ross EM, Bashford-Rogers R, Greenstein E, Markus H, Morganella S, Teng Y, Maruvka Y, Pereira B, Rueda OM, Chin SF, Contente-Cuomo T, Mayor R, Arias A, Ali HR, Cope W, Tiezzi D, Dariush A, Dias Amarante T, Reshef D, Ciriaco N, Martinez-Saez E, Peg V, Ramon Y Cajal S, Cortes J, Vassiliou G, Getz G, Nik-Zainal S, Murtaza M, Friedman N, Markowetz F, Seoane J, Caldas C. De Mattos-Arruda L, et al. Among authors: contente cuomo t. Cell Rep. 2019 May 28;27(9):2690-2708.e10. doi: 10.1016/j.celrep.2019.04.098. Cell Rep. 2019. PMID: 31141692 Free PMC article.
Personalized circulating tumor DNA analysis to detect residual disease after neoadjuvant therapy in breast cancer.
McDonald BR, Contente-Cuomo T, Sammut SJ, Odenheimer-Bergman A, Ernst B, Perdigones N, Chin SF, Farooq M, Mejia R, Cronin PA, Anderson KS, Kosiorek HE, Northfelt DW, McCullough AE, Patel BK, Weitzel JN, Slavin TP, Caldas C, Pockaj BA, Murtaza M. McDonald BR, et al. Among authors: contente cuomo t. Sci Transl Med. 2019 Aug 7;11(504):eaax7392. doi: 10.1126/scitranslmed.aax7392. Sci Transl Med. 2019. PMID: 31391323 Free PMC article.
Plasma metagenomic sequencing to detect and quantify bacterial DNA in ICU patients suspected of sepsis: A proof-of-principle study.
Kisat MT, Odenheimer-Bergman A, Markus H, Joseph B, Srivatsan SN, Contente-Cuomo T, Khalpey Z, Keim P, O'Keeffe T, Askari R, Salim A, Rhee P, Murtaza M. Kisat MT, et al. Among authors: contente cuomo t. J Trauma Acute Care Surg. 2021 Dec 1;91(6):988-994. doi: 10.1097/TA.0000000000003396. J Trauma Acute Care Surg. 2021. PMID: 34510074
Genomic landscapes of canine splenic angiosarcoma (hemangiosarcoma) contain extensive heterogeneity within and between patients.
Wong S, Ehrhart EJ, Stewart S, Zismann V, Cawley J, Halperin R, Briones N, Richter K, Sivaprakasam K, Perdigones N, Contente-Cuomo T, Facista S, Trent JM, Murtaza M, Khanna C, Hendricks WPD. Wong S, et al. Among authors: contente cuomo t. PLoS One. 2022 Jul 22;17(7):e0264986. doi: 10.1371/journal.pone.0264986. eCollection 2022. PLoS One. 2022. PMID: 35867969 Free PMC article.
Genome-wide analysis of aberrant position and sequence of plasma DNA fragment ends in patients with cancer.
Budhraja KK, McDonald BR, Stephens MD, Contente-Cuomo T, Markus H, Farooq M, Favaro PF, Connor S, Byron SA, Egan JB, Ernst B, McDaniel TK, Sekulic A, Tran NL, Prados MD, Borad MJ, Berens ME, Pockaj BA, LoRusso PM, Bryce A, Trent JM, Murtaza M. Budhraja KK, et al. Among authors: contente cuomo t. Sci Transl Med. 2023 Jan 11;15(678):eabm6863. doi: 10.1126/scitranslmed.abm6863. Epub 2023 Jan 11. Sci Transl Med. 2023. PMID: 36630480 Free PMC article.
Ultrasensitive Circulating Tumor DNA Pilot Study Distinguishes Complete Response and Partial Response With Immunotherapy in Patients With Metastatic Renal Cell Carcinoma.
Chehrazi-Raffle A, Muddasani R, Dizman N, Hsu J, Meza L, Zengin ZB, Malhotra J, Chawla N, Dorff T, Contente-Cuomo T, Dinwiddie D, McDonald BR, McDaniel T, Trent JM, Baehner FL, Murtaza M, Pal SK. Chehrazi-Raffle A, et al. Among authors: contente cuomo t. JCO Precis Oncol. 2023 Apr;7:e2200543. doi: 10.1200/PO.22.00543. JCO Precis Oncol. 2023. PMID: 37027813 Free PMC article.
Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer.
Murtaza M, Dawson SJ, Pogrebniak K, Rueda OM, Provenzano E, Grant J, Chin SF, Tsui DWY, Marass F, Gale D, Ali HR, Shah P, Contente-Cuomo T, Farahani H, Shumansky K, Kingsbury Z, Humphray S, Bentley D, Shah SP, Wallis M, Rosenfeld N, Caldas C. Murtaza M, et al. Nat Commun. 2015 Nov 4;6:8760. doi: 10.1038/ncomms9760. Nat Commun. 2015. PMID: 26530965 Free PMC article.
21 results