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Defining HLA-II ligand processing and binding rules with mass spectrometry enhances cancer epitope prediction.
Abelin JG, Harjanto D, Malloy M, Suri P, Colson T, Goulding SP, Creech AL, Serrano LR, Nasir G, Nasrullah Y, McGann CD, Velez D, Ting YS, Poran A, Rothenberg DA, Chhangawala S, Rubinsteyn A, Hammerbacher J, Gaynor RB, Fritsch EF, Greshock J, Oslund RC, Barthelme D, Addona TA, Arieta CM, Rooney MS. Abelin JG, et al. Among authors: rubinsteyn a. Immunity. 2021 Feb 9;54(2):388. doi: 10.1016/j.immuni.2020.12.005. Immunity. 2021. PMID: 33567264 Free article. No abstract available.
Defining HLA-II Ligand Processing and Binding Rules with Mass Spectrometry Enhances Cancer Epitope Prediction.
Abelin JG, Harjanto D, Malloy M, Suri P, Colson T, Goulding SP, Creech AL, Serrano LR, Nasir G, Nasrullah Y, McGann CD, Velez D, Ting YS, Poran A, Rothenberg DA, Chhangawala S, Rubinsteyn A, Hammerbacher J, Gaynor RB, Fritsch EF, Greshock J, Oslund RC, Barthelme D, Addona TA, Arieta CM, Rooney MS. Abelin JG, et al. Among authors: rubinsteyn a. Immunity. 2019 Oct 15;51(4):766-779.e17. doi: 10.1016/j.immuni.2019.08.012. Epub 2019 Sep 5. Immunity. 2019. PMID: 31495665 Free article.
MHCflurry: Open-Source Class I MHC Binding Affinity Prediction.
O'Donnell TJ, Rubinsteyn A, Bonsack M, Riemer AB, Laserson U, Hammerbacher J. O'Donnell TJ, et al. Among authors: rubinsteyn a. Cell Syst. 2018 Jul 25;7(1):129-132.e4. doi: 10.1016/j.cels.2018.05.014. Epub 2018 Jun 27. Cell Syst. 2018. PMID: 29960884 Free article.
Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.
Nathanson T, Ahuja A, Rubinsteyn A, Aksoy BA, Hellmann MD, Miao D, Van Allen E, Merghoub T, Wolchok JD, Snyder A, Hammerbacher J. Nathanson T, et al. Among authors: rubinsteyn a. Cancer Immunol Res. 2017 Jan;5(1):84-91. doi: 10.1158/2326-6066.CIR-16-0019. Epub 2016 Dec 12. Cancer Immunol Res. 2017. PMID: 27956380 Free PMC article.
Bioinformatic methods for cancer neoantigen prediction.
Boegel S, Castle JC, Kodysh J, O'Donnell T, Rubinsteyn A. Boegel S, et al. Among authors: rubinsteyn a. Prog Mol Biol Transl Sci. 2019;164:25-60. doi: 10.1016/bs.pmbts.2019.06.016. Epub 2019 Jul 18. Prog Mol Biol Transl Sci. 2019. PMID: 31383407 Review.
Landscape and selection of vaccine epitopes in SARS-CoV-2.
Smith CC, Olsen KS, Gentry KM, Sambade M, Beck W, Garness J, Entwistle S, Willis C, Vensko S, Woods A, Fini M, Carpenter B, Routh E, Kodysh J, O'Donnell T, Haber C, Heiss K, Stadler V, Garrison E, Sandor AM, Ting JPY, Weiss J, Krajewski K, Grant OC, Woods RJ, Heise M, Vincent BG, Rubinsteyn A. Smith CC, et al. Among authors: rubinsteyn a. Genome Med. 2021 Jun 14;13(1):101. doi: 10.1186/s13073-021-00910-1. Genome Med. 2021. PMID: 34127050 Free PMC article.
Landscape and Selection of Vaccine Epitopes in SARS-CoV-2.
Smith CC, Entwistle S, Willis C, Vensko S, Beck W, Garness J, Sambade M, Routh E, Olsen K, Kodysh J, O'Donnell T, Haber C, Heiss K, Stadler V, Garrison E, Grant OC, Woods RJ, Heise M, Vincent BG, Rubinsteyn A. Smith CC, et al. Among authors: rubinsteyn a. bioRxiv [Preprint]. 2020 Jun 4:2020.06.04.135004. doi: 10.1101/2020.06.04.135004. bioRxiv. 2020. PMID: 32577654 Free PMC article. Updated. Preprint.
16 results