Jones AR - Search Results

1

An OMICs-based meta-analysis to support infection state stratification.

Myall AC, Perkins S, Rushton D, David J, Spencer P, Jones AR, Antczak P. Myall AC, et al. Among authors: jones ar. Bioinformatics. 2021 Aug 25;37(16):2347-2355. doi: 10.1093/bioinformatics/btab089. Bioinformatics. 2021. PMID: 33560295 Free PMC article.

2

Numerical compression schemes for proteomics mass spectrometry data.

Teleman J, Dowsey AW, Gonzalez-Galarza FF, Perkins S, Pratt B, Röst HL, Malmström L, Malmström J, Jones AR, Deutsch EW, Levander F. Teleman J, et al. Among authors: jones ar. Mol Cell Proteomics. 2014 Jun;13(6):1537-42. doi: 10.1074/mcp.O114.037879. Epub 2014 Mar 27. Mol Cell Proteomics. 2014. PMID: 24677029 Free PMC article.

3

ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards.

Ghali F, Krishna R, Perkins S, Collins A, Xia D, Wastling J, Jones AR. Ghali F, et al. Among authors: jones ar. Proteomics. 2014 Dec;14(23-24):2731-41. doi: 10.1002/pmic.201400265. Epub 2014 Nov 19. Proteomics. 2014. PMID: 25297486

4

The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard.

Qi D, Zhang H, Fan J, Perkins S, Pisconti A, Simpson DM, Bessant C, Hubbard S, Jones AR. Qi D, et al. Among authors: jones ar. Proteomics. 2015 Sep;15(18):3152-62. doi: 10.1002/pmic.201400535. Epub 2015 Jul 14. Proteomics. 2015. PMID: 26037908 Free PMC article.

5

Evaluation of Parameters for Confident Phosphorylation Site Localization Using an Orbitrap Fusion Tribrid Mass Spectrometer.

Ferries S, Perkins S, Brownridge PJ, Campbell A, Eyers PA, Jones AR, Eyers CE. Ferries S, et al. Among authors: jones ar. J Proteome Res. 2017 Sep 1;16(9):3448-3459. doi: 10.1021/acs.jproteome.7b00337. Epub 2017 Aug 11. J Proteome Res. 2017. PMID: 28741359 Free article.

6

Strong anion exchange-mediated phosphoproteomics reveals extensive human non-canonical phosphorylation.

Hardman G, Perkins S, Brownridge PJ, Clarke CJ, Byrne DP, Campbell AE, Kalyuzhnyy A, Myall A, Eyers PA, Jones AR, Eyers CE. Hardman G, et al. Among authors: jones ar. EMBO J. 2019 Oct 4;38(21):e100847. doi: 10.15252/embj.2018100847. Epub 2019 Aug 21. EMBO J. 2019. PMID: 31433507 Free PMC article.

7

Use of the Polo-like kinase 4 (PLK4) inhibitor centrinone to investigate intracellular signalling networks using SILAC-based phosphoproteomics.

Byrne DP, Clarke CJ, Brownridge PJ, Kalyuzhnyy A, Perkins S, Campbell A, Mason D, Jones AR, Eyers PA, Eyers CE. Byrne DP, et al. Among authors: jones ar. Biochem J. 2020 Jul 17;477(13):2451-2475. doi: 10.1042/BCJ20200309. Biochem J. 2020. PMID: 32501498 Free PMC article.

8

Temporal modulation of the NF-κB RelA network in response to different types of DNA damage.

Campbell AE, Ferraz Franco C, Su LI, Corbin EK, Perkins S, Kalyuzhnyy A, Jones AR, Brownridge PJ, Perkins ND, Eyers CE. Campbell AE, et al. Among authors: jones ar. Biochem J. 2021 Feb 12;478(3):533-551. doi: 10.1042/BCJ20200627. Biochem J. 2021. PMID: 33438746 Free PMC article.

9

Custom Workflow for the Confident Identification of Sulfotyrosine-Containing Peptides and Their Discrimination from Phosphopeptides.

Daly LA, Byrne DP, Perkins S, Brownridge PJ, McDonnell E, Jones AR, Eyers PA, Eyers CE. Daly LA, et al. Among authors: jones ar. J Proteome Res. 2023 Dec 1;22(12):3754-3772. doi: 10.1021/acs.jproteome.3c00425. Epub 2023 Nov 8. J Proteome Res. 2023. PMID: 37939282 Free PMC article.

10

The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics.

Vizcaíno JA, Mayer G, Perkins S, Barsnes H, Vaudel M, Perez-Riverol Y, Ternent T, Uszkoreit J, Eisenacher M, Fischer L, Rappsilber J, Netz E, Walzer M, Kohlbacher O, Leitner A, Chalkley RJ, Ghali F, Martínez-Bartolomé S, Deutsch EW, Jones AR. Vizcaíno JA, et al. Among authors: jones ar. Mol Cell Proteomics. 2017 Jul;16(7):1275-1285. doi: 10.1074/mcp.M117.068429. Epub 2017 May 17. Mol Cell Proteomics. 2017. PMID: 28515314 Free PMC article.

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