McKay M - Search Results

1

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity.

Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Simard A, Engelthaler DM, Worobey M, Keim P, Caporaso JG. Bolyen E, et al. Among authors: mckay m. F1000Res. 2020 Jun 29;9:657. doi: 10.12688/f1000research.24751.2. eCollection 2020. F1000Res. 2020. PMID: 33500774 Free PMC article.

2

Within-host genetic diversity of SARS-CoV-2 lineages in unvaccinated and vaccinated individuals.

Gu H, Quadeer AA, Krishnan P, Ng DYM, Chang LDJ, Liu GYZ, Cheng SMS, Lam TTY, Peiris M, McKay MR, Poon LLM. Gu H, et al. Among authors: mckay mr. Nat Commun. 2023 Mar 31;14(1):1793. doi: 10.1038/s41467-023-37468-y. Nat Commun. 2023. PMID: 37002233 Free PMC article.

3

Preliminary Identification of Potential Vaccine Targets for the COVID-19 Coronavirus (SARS-CoV-2) Based on SARS-CoV Immunological Studies.

Ahmed SF, Quadeer AA, McKay MR. Ahmed SF, et al. Viruses. 2020 Feb 25;12(3):254. doi: 10.3390/v12030254. Viruses. 2020. PMID: 32106567 Free PMC article.

4

In silico T cell epitope identification for SARS-CoV-2: Progress and perspectives.

Sohail MS, Ahmed SF, Quadeer AA, McKay MR. Sohail MS, et al. Adv Drug Deliv Rev. 2021 Apr;171:29-47. doi: 10.1016/j.addr.2021.01.007. Epub 2021 Jan 17. Adv Drug Deliv Rev. 2021. PMID: 33465451 Free PMC article. Review.

5

SARS-CoV-2 T Cell Responses Elicited by COVID-19 Vaccines or Infection Are Expected to Remain Robust against Omicron.

Ahmed SF, Quadeer AA, McKay MR. Ahmed SF, et al. Viruses. 2022 Jan 2;14(1):79. doi: 10.3390/v14010079. Viruses. 2022. PMID: 35062283 Free PMC article.

6

Cross-Reactivity Assessment of Vaccine-Derived SARS-CoV-2 T Cell Responses against BA.2.86 and JN.1.

Sohail MS, Ahmed SF, Quadeer AA, McKay MR. Sohail MS, et al. Viruses. 2024 Mar 20;16(3):473. doi: 10.3390/v16030473. Viruses. 2024. PMID: 38543838 Free PMC article.

7

MPF-BML: a standalone GUI-based package for maximum entropy model inference.

Quadeer AA, McKay MR, Barton JP, Louie RHY. Quadeer AA, et al. Bioinformatics. 2020 Apr 1;36(7):2278-2279. doi: 10.1093/bioinformatics/btz925. Bioinformatics. 2020. PMID: 31851308

8

Statistical linkage analysis of substitutions in patient-derived sequences of genotype 1a hepatitis C virus nonstructural protein 3 exposes targets for immunogen design.

Quadeer AA, Louie RH, Shekhar K, Chakraborty AK, Hsing IM, McKay MR. Quadeer AA, et al. J Virol. 2014 Jul;88(13):7628-44. doi: 10.1128/JVI.03812-13. Epub 2014 Apr 23. J Virol. 2014. PMID: 24760894 Free PMC article.

9

Co-evolution networks of HIV/HCV are modular with direct association to structure and function.

Quadeer AA, Morales-Jimenez D, McKay MR. Quadeer AA, et al. PLoS Comput Biol. 2018 Sep 7;14(9):e1006409. doi: 10.1371/journal.pcbi.1006409. eCollection 2018 Sep. PLoS Comput Biol. 2018. PMID: 30192744 Free PMC article.

10

Identifying immunologically-vulnerable regions of the HCV E2 glycoprotein and broadly neutralizing antibodies that target them.

Quadeer AA, Louie RHY, McKay MR. Quadeer AA, et al. Nat Commun. 2019 May 6;10(1):2073. doi: 10.1038/s41467-019-09819-1. Nat Commun. 2019. PMID: 31061402 Free PMC article.

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