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Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity.
Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Simard A, Engelthaler DM, Worobey M, Keim P, Caporaso JG. Bolyen E, et al. Among authors: lemmer d. F1000Res. 2020 Jun 29;9:657. doi: 10.12688/f1000research.24751.2. eCollection 2020. F1000Res. 2020. PMID: 33500774 Free PMC article.
NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.
Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Williamson CHD, Hepp CM, Smith DE, Roe C, Engelthaler DM, Wagner DM, Keim P. Sahl JW, et al. Among authors: lemmer d. Microb Genom. 2016 Aug 25;2(8):e000074. doi: 10.1099/mgen.0.000074. eCollection 2016 Aug. Microb Genom. 2016. PMID: 28348869 Free PMC article.
Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role.
Bowers JR, Valentine M, Harrison V, Fofanov VY, Gillece J, Delisle J, Patton B, Schupp J, Sheridan K, Lemmer D, Ostdiek S, Bains HK, Heim J, Sylvester T, Prasai S, Kretschmer M, Fowle N, Komatsu K, Brady S, Robinson S, Fitzpatrick K, Ostovar GA, Alsop E, Hutchins E, Jensen K, Keim P, Engelthaler DM. Bowers JR, et al. Among authors: lemmer d. mBio. 2019 Jan 22;10(1):e02262-18. doi: 10.1128/mBio.02262-18. mBio. 2019. PMID: 30670612 Free PMC article.
38 results