Gardiner LJ - Search Results

1

Re-purposing software for functional characterization of the microbiome.

Gardiner LJ, Haiminen N, Utro F, Parida L, Seabolt E, Krishna R, Kaufman JH. Gardiner LJ, et al. Microbiome. 2021 Jan 9;9(1):4. doi: 10.1186/s40168-020-00971-1. Microbiome. 2021. PMID: 33422152 Free PMC article.

2

Hierarchically Labeled Database Indexing Allows Scalable Characterization of Microbiomes.

Utro F, Haiminen N, Siragusa E, Gardiner LJ, Seabolt E, Krishna R, Kaufman JH, Parida L. Utro F, et al. Among authors: gardiner lj. iScience. 2020 Apr 24;23(4):100988. doi: 10.1016/j.isci.2020.100988. Epub 2020 Mar 17. iScience. 2020. PMID: 32248063 Free PMC article.

3

Using human in vitro transcriptome analysis to build trustworthy machine learning models for prediction of animal drug toxicity.

Gardiner LJ, Carrieri AP, Wilshaw J, Checkley S, Pyzer-Knapp EO, Krishna R. Gardiner LJ, et al. Sci Rep. 2020 Jun 12;10(1):9522. doi: 10.1038/s41598-020-66481-0. Sci Rep. 2020. PMID: 32533004 Free PMC article.

4

Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences.

Carrieri AP, Haiminen N, Maudsley-Barton S, Gardiner LJ, Murphy B, Mayes AE, Paterson S, Grimshaw S, Winn M, Shand C, Hadjidoukas P, Rowe WPM, Hawkins S, MacGuire-Flanagan A, Tazzioli J, Kenny JG, Parida L, Hoptroff M, Pyzer-Knapp EO. Carrieri AP, et al. Among authors: gardiner lj. Sci Rep. 2021 Feb 25;11(1):4565. doi: 10.1038/s41598-021-83922-6. Sci Rep. 2021. PMID: 33633172 Free PMC article.

5

Interpreting machine learning models to investigate circadian regulation and facilitate exploration of clock function.

Gardiner LJ, Rusholme-Pilcher R, Colmer J, Rees H, Crescente JM, Carrieri AP, Duncan S, Pyzer-Knapp EO, Krishna R, Hall A. Gardiner LJ, et al. Proc Natl Acad Sci U S A. 2021 Aug 10;118(32):e2103070118. doi: 10.1073/pnas.2103070118. Proc Natl Acad Sci U S A. 2021. PMID: 34353905 Free PMC article.

6

Bluster or Lustre: Can AI Improve Crops and Plant Health?

Gardiner LJ, Krishna R. Gardiner LJ, et al. Plants (Basel). 2021 Dec 9;10(12):2707. doi: 10.3390/plants10122707. Plants (Basel). 2021. PMID: 34961177 Free PMC article. Review.

7

Scalable in-memory processing of omics workflows.

Elisseev V, Gardiner LJ, Krishna R. Elisseev V, et al. Among authors: gardiner lj. Comput Struct Biotechnol J. 2022 Apr 20;20:1914-1924. doi: 10.1016/j.csbj.2022.04.014. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35521547 Free PMC article.

8

Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype.

Neal AL, Barrat HA, Bacq-Lebreuil A, Qin Y, Zhang X, Takahashi T, Rubio V, Hughes D, Clark IM, Cárdenas LM, Gardiner LJ, Krishna R, Glendining ML, Ritz K, Mooney SJ, Crawford JW. Neal AL, et al. Among authors: gardiner lj. Nat Food. 2023 Jan;4(1):51-60. doi: 10.1038/s43016-022-00671-z. Epub 2022 Dec 23. Nat Food. 2023. PMID: 37118575

9

Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat.

Gardiner LJ, Brabbs T, Akhunov A, Jordan K, Budak H, Richmond T, Singh S, Catchpole L, Akhunov E, Hall A. Gardiner LJ, et al. Gigascience. 2019 Apr 1;8(4):giz018. doi: 10.1093/gigascience/giz018. Gigascience. 2019. PMID: 30715311 Free PMC article.

10

A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample.

Olohan L, Gardiner LJ, Lucaci A, Steuernagel B, Wulff B, Kenny J, Hall N, Hall A. Olohan L, et al. Among authors: gardiner lj. BMC Genomics. 2018 Apr 13;19(1):250. doi: 10.1186/s12864-018-4640-y. BMC Genomics. 2018. PMID: 29653520 Free PMC article.

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