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Antibody responses to endemic coronaviruses modulate COVID-19 convalescent plasma functionality.
Morgenlander W, Henson S, Monaco D, Chen A, Littlefield K, Bloch EM, Fujimura E, Ruczinski I, Crowley AR, Natarajan H, Butler SE, Weiner JA, Li MZ, Bonny TS, Benner SE, Ashwin Balagopal, Sullivan D, Shoham S, Quinn TC, Eshleman S, Casadevall A, Redd AD, Laeyendecker O, Ackerman ME, Pekosz A, Elledge SJ, Robinson M, Tobian AAR, Larman HB. Morgenlander W, et al. Among authors: ruczinski i. medRxiv [Preprint]. 2020 Dec 18:2020.12.16.20248294. doi: 10.1101/2020.12.16.20248294. medRxiv. 2020. PMID: 33354688 Free PMC article. Updated. Preprint.
Comprehensive Profiling of HIV Antibody Evolution.
Eshleman SH, Laeyendecker O, Kammers K, Chen A, Sivay MV, Kottapalli S, Sie BM, Yuan T, Monaco DR, Mohan D, Wansley D, Kula T, Morrison C, Elledge SJ, Brookmeyer R, Ruczinski I, Larman HB. Eshleman SH, et al. Among authors: ruczinski i. Cell Rep. 2019 Apr 30;27(5):1422-1433.e4. doi: 10.1016/j.celrep.2019.03.097. Cell Rep. 2019. PMID: 31042470 Free PMC article.
Antibody responses to endemic coronaviruses modulate COVID-19 convalescent plasma functionality.
Morgenlander WR, Henson SN, Monaco DR, Chen A, Littlefield K, Bloch EM, Fujimura E, Ruczinski I, Crowley AR, Natarajan H, Butler SE, Weiner JA, Li MZ, Bonny TS, Benner SE, Balagopal A, Sullivan D, Shoham S, Quinn TC, Eshleman SH, Casadevall A, Redd AD, Laeyendecker O, Ackerman ME, Pekosz A, Elledge SJ, Robinson M, Tobian AA, Larman HB. Morgenlander WR, et al. Among authors: ruczinski i. J Clin Invest. 2021 Apr 1;131(7):e146927. doi: 10.1172/JCI146927. J Clin Invest. 2021. PMID: 33571169 Free PMC article.
A top scoring pairs classifier for recent HIV infections.
Chen A, Laeyendecker O, Eshleman SH, Monaco DR, Kammers K, Larman HB, Ruczinski I. Chen A, et al. Among authors: ruczinski i. Stat Med. 2021 May 20;40(11):2604-2612. doi: 10.1002/sim.8920. Epub 2021 Mar 3. Stat Med. 2021. PMID: 33660319 Free PMC article.
HIV Antibody Profiles in HIV Controllers and Persons With Treatment-Induced Viral Suppression.
Kammers K, Chen A, Monaco DR, Hudelson SE, Grant-McAuley W, Moore RD, Alter G, Deeks SG, Morrison CS, Eller LA, Blankson JN, Laeyendecker O, Ruczinski I, Eshleman SH, Larman HB. Kammers K, et al. Among authors: ruczinski i. Front Immunol. 2021 Aug 26;12:740395. doi: 10.3389/fimmu.2021.740395. eCollection 2021. Front Immunol. 2021. PMID: 34512672 Free PMC article.
Phage display of environmental protein toxins and virulence factors reveals the prevalence, persistence, and genetics of antibody responses.
Angkeow JW, Monaco DR, Chen A, Venkataraman T, Jayaraman S, Valencia C, Sie BM, Liechti T, Farhadi PN, Funez-dePagnier G, Sherman-Baust CA, Wong MQ, Ruczinski I, Caturegli P, Sears CL, Simner PJ, Round JL, Duggal P, Laserson U, Steiner TS, Sen R, Lloyd TE, Roederer M, Mammen AL, Longman RS, Rider LG, Larman HB. Angkeow JW, et al. Among authors: ruczinski i. Immunity. 2022 Jun 14;55(6):1051-1066.e4. doi: 10.1016/j.immuni.2022.05.002. Epub 2022 May 31. Immunity. 2022. PMID: 35649416 Free PMC article.
Structural variation across 138,134 samples in the TOPMed consortium.
Jun G, English AC, Metcalf GA, Yang J, Chaisson MJ, Pankratz N, Menon VK, Salerno WJ, Krasheninina O, Smith AV, Lane JA, Blackwell T, Kang HM, Salvi S, Meng Q, Shen H, Pasham D, Bhamidipati S, Kottapalli K, Arnett DK, Ashley-Koch A, Auer PL, Beutel KM, Bis JC, Blangero J, Bowden DW, Brody JA, Cade BE, Chen YI, Cho MH, Curran JE, Fornage M, Freedman BI, Fingerlin T, Gelb BD, Hou L, Hung YJ, Kane JP, Kaplan R, Kim W, Loos RJF, Marcus GM, Mathias RA, McGarvey ST, Montgomery C, Naseri T, Nouraie SM, Preuss MH, Palmer ND, Peyser PA, Raffield LM, Ratan A, Redline S, Reupena S, Rotter JI, Rich SS, Rienstra M, Ruczinski I, Sankaran VG, Schwartz DA, Seidman CE, Seidman JG, Silverman EK, Smith JA, Stilp A, Taylor KD, Telen MJ, Weiss ST, Williams LK, Wu B, Yanek LR, Zhang Y, Lasky-Su J, Gingras MC, Dutcher SK, Eichler EE, Gabriel S, Germer S, Kim R, Viaud-Martinez KA, Nickerson DA; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Luo J, Reiner A, Gibbs RA, Boerwinkle E, Abecasis G, Sedlazeck FJ. Jun G, et al. Among authors: ruczinski i. bioRxiv [Preprint]. 2023 Jan 25:2023.01.25.525428. doi: 10.1101/2023.01.25.525428. bioRxiv. 2023. PMID: 36747810 Free PMC article. Preprint.
SNPchip: R classes and methods for SNP array data.
Scharpf RB, Ting JC, Pevsner J, Ruczinski I. Scharpf RB, et al. Among authors: ruczinski i. Bioinformatics. 2007 Mar 1;23(5):627-8. doi: 10.1093/bioinformatics/btl638. Epub 2007 Jan 4. Bioinformatics. 2007. PMID: 17204461
239 results