Zaugg JB - Search Results

1

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis.

Ranzoni AM, Tangherloni A, Berest I, Riva SG, Myers B, Strzelecka PM, Xu J, Panada E, Mohorianu I, Zaugg JB, Cvejic A. Ranzoni AM, et al. Among authors: zaugg jb. Cell Stem Cell. 2021 Mar 4;28(3):472-487.e7. doi: 10.1016/j.stem.2020.11.015. Epub 2020 Dec 21. Cell Stem Cell. 2021. PMID: 33352111 Free PMC article.

2

TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells.

Rasmussen KD, Berest I, Keβler S, Nishimura K, Simón-Carrasco L, Vassiliou GS, Pedersen MT, Christensen J, Zaugg JB, Helin K. Rasmussen KD, et al. Among authors: zaugg jb. Genome Res. 2019 Apr;29(4):564-575. doi: 10.1101/gr.239277.118. Epub 2019 Feb 22. Genome Res. 2019. PMID: 30796038 Free PMC article.

3

Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF.

Berest I, Arnold C, Reyes-Palomares A, Palla G, Rasmussen KD, Giles H, Bruch PM, Huber W, Dietrich S, Helin K, Zaugg JB. Berest I, et al. Among authors: zaugg jb. Cell Rep. 2019 Dec 3;29(10):3147-3159.e12. doi: 10.1016/j.celrep.2019.10.106. Cell Rep. 2019. PMID: 31801079 Free article.

4

Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension.

Reyes-Palomares A, Gu M, Grubert F, Berest I, Sa S, Kasowski M, Arnold C, Shuai M, Srivas R, Miao S, Li D, Snyder MP, Rabinovitch M, Zaugg JB. Reyes-Palomares A, et al. Among authors: zaugg jb. Nat Commun. 2020 Apr 3;11(1):1673. doi: 10.1038/s41467-020-15463-x. Nat Commun. 2020. PMID: 32245974 Free PMC article.

5

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions.

Grubert F, Zaugg JB, Kasowski M, Ursu O, Spacek DV, Martin AR, Greenside P, Srivas R, Phanstiel DH, Pekowska A, Heidari N, Euskirchen G, Huber W, Pritchard JK, Bustamante CD, Steinmetz LM, Kundaje A, Snyder M. Grubert F, et al. Among authors: zaugg jb. Cell. 2015 Aug 27;162(5):1051-65. doi: 10.1016/j.cell.2015.07.048. Epub 2015 Aug 20. Cell. 2015. PMID: 26300125 Free PMC article.

6

Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline.

Hennrich ML, Romanov N, Horn P, Jaeger S, Eckstein V, Steeples V, Ye F, Ding X, Poisa-Beiro L, Lai MC, Lang B, Boultwood J, Luft T, Zaugg JB, Pellagatti A, Bork P, Aloy P, Gavin AC, Ho AD. Hennrich ML, et al. Among authors: zaugg jb. Nat Commun. 2018 Oct 1;9(1):4004. doi: 10.1038/s41467-018-06353-4. Nat Commun. 2018. PMID: 30275468 Free PMC article.

7

Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons.

Bunina D, Abazova N, Diaz N, Noh KM, Krijgsveld J, Zaugg JB. Bunina D, et al. Among authors: zaugg jb. Cell Syst. 2020 Jun 24;10(6):480-494.e8. doi: 10.1016/j.cels.2020.05.003. Epub 2020 Jun 17. Cell Syst. 2020. PMID: 32553182 Free PMC article.

8

Donor cell memory confers a metastable state of directly converted cells.

Kim KP, Li C, Bunina D, Jeong HW, Ghelman J, Yoon J, Shin B, Park H, Han DW, Zaugg JB, Kim J, Kuhlmann T, Adams RH, Noh KM, Goldman SA, Schöler HR. Kim KP, et al. Among authors: zaugg jb. Cell Stem Cell. 2021 Jul 1;28(7):1291-1306.e10. doi: 10.1016/j.stem.2021.02.023. Epub 2021 Apr 12. Cell Stem Cell. 2021. PMID: 33848472 Free article.

9

Transcription factors: Bridge between cell signaling and gene regulation.

Weidemüller P, Kholmatov M, Petsalaki E, Zaugg JB. Weidemüller P, et al. Among authors: zaugg jb. Proteomics. 2021 Dec;21(23-24):e2000034. doi: 10.1002/pmic.202000034. Epub 2021 Aug 9. Proteomics. 2021. PMID: 34314098 Review.

10

Genome-wide quantification of transcription factor binding at single-DNA-molecule resolution using methyl-transferase footprinting.

Kleinendorst RWD, Barzaghi G, Smith ML, Zaugg JB, Krebs AR. Kleinendorst RWD, et al. Among authors: zaugg jb. Nat Protoc. 2021 Dec;16(12):5673-5706. doi: 10.1038/s41596-021-00630-1. Epub 2021 Nov 12. Nat Protoc. 2021. PMID: 34773120 Free PMC article. Review.

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