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An Efficient Algorithm to Count Tree-Like Graphs with a Given Number of Vertices and Self-Loops.
Entropy (Basel). 2020 Aug 22;22(9):923. doi: 10.3390/e22090923.
Entropy (Basel). 2020.
PMID: 33286692
Free PMC article.
Enumerating Tree-Like Graphs and Polymer Topologies with a Given Cycle Rank.
Azam NA, Shurbevski A, Nagamochi H.
Azam NA, et al. Among authors: shurbevski a.
Entropy (Basel). 2020 Nov 13;22(11):1295. doi: 10.3390/e22111295.
Entropy (Basel). 2020.
PMID: 33287063
Free PMC article.
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A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming.
Azam NA, Zhu J, Sun Y, Shi Y, Shurbevski A, Zhao L, Nagamochi H, Akutsu T.
Azam NA, et al. Among authors: shurbevski a.
Algorithms Mol Biol. 2021 Aug 14;16(1):18. doi: 10.1186/s13015-021-00197-2.
Algorithms Mol Biol. 2021.
PMID: 34391471
Free PMC article.
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Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs.
Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T.
Nishiyama Y, et al. Among authors: shurbevski a.
IEEE/ACM Trans Comput Biol Bioinform. 2019 Jan-Feb;16(1):77-90. doi: 10.1109/TCBB.2018.2832061. Epub 2018 May 1.
IEEE/ACM Trans Comput Biol Bioinform. 2019.
PMID: 29994050
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A Novel Method for Inferring Chemical Compounds With Prescribed Topological Substructures Based on Integer Programming.
Zhu J, Azam NA, Zhang F, Shurbevski A, Haraguchi K, Zhao L, Nagamochi H, Akutsu T.
Zhu J, et al. Among authors: shurbevski a.
IEEE/ACM Trans Comput Biol Bioinform. 2022 Nov-Dec;19(6):3233-3245. doi: 10.1109/TCBB.2021.3112598. Epub 2022 Dec 8.
IEEE/ACM Trans Comput Biol Bioinform. 2022.
PMID: 34520360
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