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FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.
Abugessaisa I, Ramilowski JA, Lizio M, Severin J, Hasegawa A, Harshbarger J, Kondo A, Noguchi S, Yip CW, Ooi JLC, Tagami M, Hori F, Agrawal S, Hon CC, Cardon M, Ikeda S, Ono H, Bono H, Kato M, Hashimoto K, Bonetti A, Kato M, Kobayashi N, Shin J, de Hoon M, Hayashizaki Y, Carninci P, Kawaji H, Kasukawa T. Abugessaisa I, et al. Among authors: severin j. Nucleic Acids Res. 2021 Jan 8;49(D1):D892-D898. doi: 10.1093/nar/gkaa1054. Nucleic Acids Res. 2021. PMID: 33211864 Free PMC article.
Human genome meeting 2016 : Houston, TX, USA. 28 February - 2 March 2016.
Srivastava AK, Wang Y, Huang R, Skinner C, Thompson T, Pollard L, Wood T, Luo F, Stevenson R, Polimanti R, Gelernter J, Lin X, Lim IY, Wu Y, Teh AL, Chen L, Aris IM, Soh SE, Tint MT, MacIsaac JL, Yap F, Kwek K, Saw SM, Kobor MS, Meaney MJ, Godfrey KM, Chong YS, Holbrook JD, Lee YS, Gluckman PD, Karnani N; GUSTO study group; Kapoor A, Lee D, Chakravarti A, Maercker C, Graf F, Boutros M, Stamoulis G, Santoni F, Makrythanasis P, Letourneau A, Guipponi M, Panousis N, Garieri M, Ribaux P, Falconnet E, Borel C, Antonarakis SE, Kumar S, Curran J, Blangero J, Chatterjee S, Kapoor A, Akiyama J, Auer D, Berrios C, Pennacchio L, Chakravarti A, Donti TR, Cappuccio G, Miller M, Atwal P, Kennedy A, Cardon A, Bacino C, Emrick L, Hertecant J, Baumer F, Porter B, Bainbridge M, Bonnen P, Graham B, Sutton R, Sun Q, Elsea S, Hu Z, Wang P, Zhu Y, Zhao J, Xiong M, Bennett DA, Hidalgo-Miranda A, Romero-Cordoba S, Rodriguez-Cuevas S, Rebollar-Vega R, Tagliabue E, Iorio M, D’Ippolito E, Baroni S, Kaczkowski B, Tanaka Y, Kawaji H, Sandelin A, Andersson R, Itoh M, Lassmann T; The FANTOM5 Consortium; Hayashizaki Y, Carninci P, Forrest ARR, Semple CA, Rosenthal EA, Shirts B, Amendola L, Gallego C, Horike-Pyne… See abstract for full author list ➔ Srivastava AK, et al. Among authors: severin j. Hum Genomics. 2016 May 26;10 Suppl 1(Suppl 1):12. doi: 10.1186/s40246-016-0063-5. Hum Genomics. 2016. PMID: 27294413 Free PMC article.
J. Whiite, T. Chiang, A. English, J. Farek, Z. Kahn, W. Salerno, N. ...Gibbs P42 FANTOM5 web resource for the large-scale genome-wide transcription start site activity profiles of wide-range of mammalian cells T. Kasukawa, M. Lizio, J. Harshbarger, S. Hisashi …
J. Whiite, T. Chiang, A. English, J. Farek, Z. Kahn, W. Salerno, N. ...Gibbs P42 FANTOM5 web resource for the large-scale geno …
Annotation of nuclear lncRNAs based on chromatin interactions.
Agrawal S, Buyan A, Severin J, Koido M, Alam T, Abugessaisa I, Chang HY, Dostie J, Itoh M, Kere J, Kondo N, Li Y, Makeev VJ, Mendez M, Okazaki Y, Ramilowski JA, Sigorskikh AI, Strug LJ, Yagi K, Yasuzawa K, Yip CW, Hon CC, Hoffman MM, Terao C, Kulakovskiy IV, Kasukawa T, Shin JW, Carninci P, de Hoon MJL. Agrawal S, et al. Among authors: severin j. PLoS One. 2024 May 6;19(5):e0295971. doi: 10.1371/journal.pone.0295971. eCollection 2024. PLoS One. 2024. PMID: 38709794 Free PMC article.
Proposal for a screening protocol for Candida auris colonization.
Leonhard SE, Chong GM, Foudraine DE, Bode LGM, Croughs P, Popping S, Schaftenaar E, Klaassen CHW, Severin JA. Leonhard SE, et al. Among authors: severin ja. J Hosp Infect. 2024 Apr;146:31-36. doi: 10.1016/j.jhin.2023.12.019. Epub 2024 Jan 27. J Hosp Infect. 2024. PMID: 38286238 Free article.
Dynamics of Staphylococcus aureus in patients and the hospital environment in a tertiary care hospital in the Netherlands.
van der Schoor AS, Voor In 't Holt AF, Zandijk WHA, Bruno MJ, Gommers D, van den Akker JPC, Hendriks JM, Severin JA, Klaassen CHW, Vos MC. van der Schoor AS, et al. Among authors: severin ja. Antimicrob Resist Infect Control. 2023 Dec 20;12(1):148. doi: 10.1186/s13756-023-01349-2. Antimicrob Resist Infect Control. 2023. PMID: 38124120 Free PMC article.
Description of a nationwide structure for monitoring nosocomial outbreaks of (highly resistant) microorganisms in the Netherlands: characteristics of outbreaks in 2012-2021.
Woudt SH, Schoffelen AF, Frakking FN, Reuland EA, Severin JA, den Drijver M, Haenen A, Nonneman MM, Notermans DW, Aan de Stegge DC, de Stoppelaar SF, Vandenbroucke-Grauls CM, de Greeff SC. Woudt SH, et al. Among authors: severin ja. Antimicrob Resist Infect Control. 2023 Dec 8;12(1):143. doi: 10.1186/s13756-023-01350-9. Antimicrob Resist Infect Control. 2023. PMID: 38066583 Free PMC article.
206 results