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Characterization of an eutherian gene cluster generated after transposon domestication identifies Bex3 as relevant for advanced neurological functions.
Genome Biol. 2020 Oct 26;21(1):267. doi: 10.1186/s13059-020-02172-3.
Genome Biol. 2020.
PMID: 33100228
Free PMC article.
Zerone: a ChIP-seq discretizer for multiple replicates with built-in quality control.
Cuscó P, Filion GJ.
Cuscó P, et al.
Bioinformatics. 2016 Oct 1;32(19):2896-902. doi: 10.1093/bioinformatics/btw336. Epub 2016 Jun 10.
Bioinformatics. 2016.
PMID: 27288492
Free PMC article.
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Hierarchical chromatin organization detected by TADpole.
Soler-Vila P, Cuscó P, Farabella I, Di Stefano M, Marti-Renom MA.
Soler-Vila P, et al. Among authors: cusco p.
Nucleic Acids Res. 2020 Apr 17;48(7):e39. doi: 10.1093/nar/gkaa087.
Nucleic Acids Res. 2020.
PMID: 32083658
Free PMC article.
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Starcode: sequence clustering based on all-pairs search.
Zorita E, Cuscó P, Filion GJ.
Zorita E, et al. Among authors: cusco p.
Bioinformatics. 2015 Jun 15;31(12):1913-9. doi: 10.1093/bioinformatics/btv053. Epub 2015 Jan 31.
Bioinformatics. 2015.
PMID: 25638815
Free PMC article.
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Machine Learning: How Much Does It Tell about Protein Folding Rates?
Corrales M, Cuscó P, Usmanova DR, Chen HC, Bogatyreva NS, Filion GJ, Ivankov DN.
Corrales M, et al. Among authors: cusco p.
PLoS One. 2015 Nov 25;10(11):e0143166. doi: 10.1371/journal.pone.0143166. eCollection 2015.
PLoS One. 2015.
PMID: 26606303
Free PMC article.
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Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation.
Vilarrasa-Blasi R, Soler-Vila P, Verdaguer-Dot N, Russiñol N, Di Stefano M, Chapaprieta V, Clot G, Farabella I, Cuscó P, Kulis M, Agirre X, Prosper F, Beekman R, Beà S, Colomer D, Stunnenberg HG, Gut I, Campo E, Marti-Renom MA, Martin-Subero JI.
Vilarrasa-Blasi R, et al. Among authors: cusco p.
Nat Commun. 2021 Jan 28;12(1):651. doi: 10.1038/s41467-020-20849-y.
Nat Commun. 2021.
PMID: 33510161
Free PMC article.
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Mass Spectrometry Identification of Biomarkers in Extracellular Vesicles From Plasmodium vivax Liver Hypnozoite Infections.
Gualdrón-López M, Díaz-Varela M, Zanghi G, Aparici-Herraiz I, Steel RWJ, Schäfer C, Cuscó P, Chuenchob V, Kangwangransan N, Billman ZP, Olsen TM, González JR, Roobsoong W, Sattabongkot J, Murphy SC, Mikolajczak SA, Borràs E, Sabidó E, Fernandez-Becerra C, Flannery EL, Kappe SHI, Del Portillo HA.
Gualdrón-López M, et al. Among authors: cusco p.
Mol Cell Proteomics. 2022 Oct;21(10):100406. doi: 10.1016/j.mcpro.2022.100406. Epub 2022 Aug 24.
Mol Cell Proteomics. 2022.
PMID: 36030044
Free PMC article.
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The temporal mutational and immune tumour microenvironment remodelling of HER2-negative primary breast cancers.
De Mattos-Arruda L, Cortes J, Blanco-Heredia J, Tiezzi DG, Villacampa G, Gonçalves-Ribeiro S, Paré L, Souza CA, Ortega V, Sammut SJ, Cusco P, Fasani R, Chin SF, Perez-Garcia J, Dienstmann R, Nuciforo P, Villagrasa P, Rubio IT, Prat A, Caldas C.
De Mattos-Arruda L, et al. Among authors: cusco p.
NPJ Breast Cancer. 2021 Jun 7;7(1):73. doi: 10.1038/s41523-021-00282-0.
NPJ Breast Cancer. 2021.
PMID: 34099718
Free PMC article.
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