Šulc P - Search Results

1

Understanding DNA interactions in crowded environments with a coarse-grained model.

Hong F, Schreck JS, Šulc P. Hong F, et al. Among authors: sulc p. Nucleic Acids Res. 2020 Nov 4;48(19):10726-10738. doi: 10.1093/nar/gkaa854. Nucleic Acids Res. 2020. PMID: 33045749 Free PMC article.

2

DNA hybridization kinetics: zippering, internal displacement and sequence dependence.

Ouldridge TE, Sulc P, Romano F, Doye JP, Louis AA. Ouldridge TE, et al. Among authors: sulc p. Nucleic Acids Res. 2013 Oct;41(19):8886-95. doi: 10.1093/nar/gkt687. Epub 2013 Aug 8. Nucleic Acids Res. 2013. PMID: 23935069 Free PMC article.

3

On the biophysics and kinetics of toehold-mediated DNA strand displacement.

Srinivas N, Ouldridge TE, Sulc P, Schaeffer JM, Yurke B, Louis AA, Doye JP, Winfree E. Srinivas N, et al. Among authors: sulc p. Nucleic Acids Res. 2013 Dec;41(22):10641-58. doi: 10.1093/nar/gkt801. Epub 2013 Sep 9. Nucleic Acids Res. 2013. PMID: 24019238 Free PMC article.

4

Coarse-graining DNA for simulations of DNA nanotechnology.

Doye JP, Ouldridge TE, Louis AA, Romano F, Šulc P, Matek C, Snodin BE, Rovigatti L, Schreck JS, Harrison RM, Smith WP. Doye JP, et al. Among authors: sulc p. Phys Chem Chem Phys. 2013 Dec 21;15(47):20395-414. doi: 10.1039/c3cp53545b. Epub 2013 Oct 11. Phys Chem Chem Phys. 2013. PMID: 24121860 Free article.

5

DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization.

Schreck JS, Ouldridge TE, Romano F, Šulc P, Shaw LP, Louis AA, Doye JP. Schreck JS, et al. Among authors: sulc p. Nucleic Acids Res. 2015 Jul 27;43(13):6181-90. doi: 10.1093/nar/gkv582. Epub 2015 Jun 8. Nucleic Acids Res. 2015. PMID: 26056172 Free PMC article.

6

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.

Snodin BE, Randisi F, Mosayebi M, Šulc P, Schreck JS, Romano F, Ouldridge TE, Tsukanov R, Nir E, Louis AA, Doye JP. Snodin BE, et al. Among authors: sulc p. J Chem Phys. 2015 Jun 21;142(23):234901. doi: 10.1063/1.4921957. J Chem Phys. 2015. PMID: 26093573 Free article.

7

Layered-Crossover Tiles with Precisely Tunable Angles for 2D and 3D DNA Crystal Engineering.

Hong F, Jiang S, Lan X, Narayanan RP, Šulc P, Zhang F, Liu Y, Yan H. Hong F, et al. Among authors: sulc p. J Am Chem Soc. 2018 Nov 7;140(44):14670-14676. doi: 10.1021/jacs.8b07180. Epub 2018 Oct 29. J Am Chem Soc. 2018. PMID: 30336007

8

An emergent understanding of strand displacement in RNA biology.

Hong F, Šulc P. Hong F, et al. Among authors: sulc p. J Struct Biol. 2019 Sep 1;207(3):241-249. doi: 10.1016/j.jsb.2019.06.005. Epub 2019 Jun 18. J Struct Biol. 2019. PMID: 31220588

9

Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation.

Poppleton E, Bohlin J, Matthies M, Sharma S, Zhang F, Šulc P. Poppleton E, et al. Among authors: sulc p. Nucleic Acids Res. 2020 Jul 9;48(12):e72. doi: 10.1093/nar/gkaa417. Nucleic Acids Res. 2020. PMID: 32449920 Free PMC article.

10

Coarse-grained nucleic acid-protein model for hybrid nanotechnology.

Procyk J , Poppleton E , Šulc P . Procyk J , et al. Among authors: sulc p. Soft Matter. 2021 Apr 7;17(13):3586-3593. doi: 10.1039/d0sm01639j. Epub 2021 Jan 5. Soft Matter. 2021. PMID: 33398312

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