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The Bitome: digitized genomic features reveal fundamental genome organization.
Lamoureux CR, Choudhary KS, King ZA, Sandberg TE, Gao Y, Sastry AV, Phaneuf PV, Choe D, Cho BK, Palsson BO. Lamoureux CR, et al. Among authors: gao y. Nucleic Acids Res. 2020 Oct 9;48(18):10157-10163. doi: 10.1093/nar/gkaa774. Nucleic Acids Res. 2020. PMID: 32976587 Free PMC article.
Cellular responses to reactive oxygen species are predicted from molecular mechanisms.
Yang L, Mih N, Anand A, Park JH, Tan J, Yurkovich JT, Monk JM, Lloyd CJ, Sandberg TE, Seo SW, Kim D, Sastry AV, Phaneuf P, Gao Y, Broddrick JT, Chen K, Heckmann D, Szubin R, Hefner Y, Feist AM, Palsson BO. Yang L, et al. Among authors: gao y. Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14368-14373. doi: 10.1073/pnas.1905039116. Epub 2019 Jul 3. Proc Natl Acad Sci U S A. 2019. PMID: 31270234 Free PMC article.
Adaptive laboratory evolution of Escherichia coli under acid stress.
Du B, Olson CA, Sastry AV, Fang X, Phaneuf PV, Chen K, Wu M, Szubin R, Xu S, Gao Y, Hefner Y, Feist AM, Palsson BO. Du B, et al. Among authors: gao y. Microbiology (Reading). 2020 Feb;166(2):141-148. doi: 10.1099/mic.0.000867. Epub 2019 Oct 18. Microbiology (Reading). 2020. PMID: 31625833 Free PMC article.
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