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Segmenting the human genome based on states of neutral genetic divergence.
Kuruppumullage Don P, Ananda G, Chiaromonte F, Makova KD. Kuruppumullage Don P, et al. Among authors: chiaromonte f. Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14699-704. doi: 10.1073/pnas.1221792110. Epub 2013 Aug 19. Proc Natl Acad Sci U S A. 2013. PMID: 23959903 Free PMC article.
Functional data analysis for computational biology.
Cremona MA, Xu H, Makova KD, Reimherr M, Chiaromonte F, Madrigal P. Cremona MA, et al. Among authors: chiaromonte f. Bioinformatics. 2019 Sep 1;35(17):3211-3213. doi: 10.1093/bioinformatics/btz045. Bioinformatics. 2019. PMID: 30668667 Free PMC article.
Global predictions and tests of erythroid regulatory regions.
Hardison RC, Chiaromonte F, Kolbe D, Wang H, Petrykowska H, Elnitski L, Yang S, Giardine B, Zhang Y, Riemer C, Schwartz S, Haussler D, Roskin KM, Weber RJ, Diekhans M, Kent WJ, Weiss MJ, Welch J, Miller W. Hardison RC, et al. Among authors: chiaromonte f. Cold Spring Harb Symp Quant Biol. 2003;68:335-44. doi: 10.1101/sqb.2003.68.335. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338635 No abstract available.
Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data.
King DC, Taylor J, Zhang Y, Cheng Y, Lawson HA, Martin J; ENCODE groups for Transcriptional Regulation and Multispecies Sequence Analysis; Chiaromonte F, Miller W, Hardison RC. King DC, et al. Among authors: chiaromonte f. Genome Res. 2007 Jun;17(6):775-86. doi: 10.1101/gr.5592107. Genome Res. 2007. PMID: 17567996 Free PMC article.
Complete Khoisan and Bantu genomes from southern Africa.
Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, Muzny DM, Reid JG, Nazareth LV, Wang Q, Burhans R, Riemer C, Wittekindt NE, Moorjani P, Tindall EA, Danko CG, Teo WS, Buboltz AM, Zhang Z, Ma Q, Oosthuysen A, Steenkamp AW, Oostuisen H, Venter P, Gajewski J, Zhang Y, Pugh BF, Makova KD, Nekrutenko A, Mardis ER, Patterson N, Pringle TH, Chiaromonte F, Mullikin JC, Eichler EE, Hardison RC, Gibbs RA, Harkins TT, Hayes VM. Schuster SC, et al. Among authors: chiaromonte f. Nature. 2010 Feb 18;463(7283):943-7. doi: 10.1038/nature08795. Nature. 2010. PMID: 20164927 Free PMC article.
76 results