Standley DM - Search Results

1

Methods for sequence and structural analysis of B and T cell receptor repertoires.

Teraguchi S, Saputri DS, Llamas-Covarrubias MA, Davila A, Diez D, Nazlica SA, Rozewicki J, Ismanto HS, Wilamowski J, Xie J, Xu Z, Loza-Lopez MJ, van Eerden FJ, Li S, Standley DM. Teraguchi S, et al. Among authors: standley dm. Comput Struct Biotechnol J. 2020 Jul 17;18:2000-2011. doi: 10.1016/j.csbj.2020.07.008. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32802272 Free PMC article. Review.

2

Intrinsically disordered domains deviate significantly from random sequences in mammalian proteins.

Teraguchi S, Patil A, Standley DM. Teraguchi S, et al. Among authors: standley dm. BMC Bioinformatics. 2010 Oct 15;11 Suppl 7(Suppl 7):S7. doi: 10.1186/1471-2105-11-S7-S7. BMC Bioinformatics. 2010. PMID: 21106129 Free PMC article.

3

The IκB kinase complex regulates the stability of cytokine-encoding mRNA induced by TLR-IL-1R by controlling degradation of regnase-1.

Iwasaki H, Takeuchi O, Teraguchi S, Matsushita K, Uehata T, Kuniyoshi K, Satoh T, Saitoh T, Matsushita M, Standley DM, Akira S. Iwasaki H, et al. Among authors: standley dm. Nat Immunol. 2011 Oct 30;12(12):1167-75. doi: 10.1038/ni.2137. Nat Immunol. 2011. PMID: 22037600

4

Functional annotation of intrinsically disordered domains by their amino acid content using IDD Navigator.

Patil A, Teraguchi S, Dinh H, Nakai K, Standley DM. Patil A, et al. Among authors: standley dm. Pac Symp Biocomput. 2012:164-75. Pac Symp Biocomput. 2012. PMID: 22174272 Free article.

5

Stochastic binary modeling of cells in continuous time as an alternative to biochemical reaction equations.

Teraguchi S, Kumagai Y, Vandenbon A, Akira S, Standley DM. Teraguchi S, et al. Among authors: standley dm. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Dec;84(6 Pt 1):062903. doi: 10.1103/PhysRevE.84.062903. Epub 2011 Dec 15. Phys Rev E Stat Nonlin Soft Matter Phys. 2011. PMID: 22304139

6

Systems biology approaches to toll-like receptor signaling.

Vandenbon A, Teraguchi S, Akira S, Takeda K, Standley DM. Vandenbon A, et al. Among authors: standley dm. Wiley Interdiscip Rev Syst Biol Med. 2012 Sep-Oct;4(5):497-507. doi: 10.1002/wsbm.1178. Epub 2012 Jun 19. Wiley Interdiscip Rev Syst Biol Med. 2012. PMID: 22714995 Free PMC article.

7

A Parzen window-based approach for the detection of locally enriched transcription factor binding sites.

Vandenbon A, Kumagai Y, Teraguchi S, Amada KM, Akira S, Standley DM. Vandenbon A, et al. Among authors: standley dm. BMC Bioinformatics. 2013 Jan 21;14:26. doi: 10.1186/1471-2105-14-26. BMC Bioinformatics. 2013. PMID: 23331723 Free PMC article.

8

A novel protein distance matrix based on the minimum arc-length between two amino-acid residues on the surface of a globular protein.

Hall D, Li S, Yamashita K, Azuma R, Carver JA, Standley DM. Hall D, et al. Among authors: standley dm. Biophys Chem. 2014 Jun;190-191:50-5. doi: 10.1016/j.bpc.2014.01.005. Epub 2014 Feb 13. Biophys Chem. 2014. PMID: 24589301

9

Quantifying sequence and structural features of protein-RNA interactions.

Li S, Yamashita K, Amada KM, Standley DM. Li S, et al. Among authors: standley dm. Nucleic Acids Res. 2014 Sep;42(15):10086-98. doi: 10.1093/nar/gku681. Epub 2014 Jul 25. Nucleic Acids Res. 2014. PMID: 25063293 Free PMC article.

10

Mapping circulating serum miRNAs to their immune-related target mRNAs.

Nosirov B, Billaud J, Vandenbon A, Diez D, Wijaya E, Ishii KJ, Teraguchi S, Standley DM. Nosirov B, et al. Among authors: standley dm. Adv Appl Bioinform Chem. 2017 Feb 2;10:1-9. doi: 10.2147/AABC.S121598. eCollection 2017. Adv Appl Bioinform Chem. 2017. PMID: 28203094 Free PMC article.

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