Huang TH - Search Results

1

Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops.

Zhou Y, Cheng X, Yang Y, Li T, Li J, Huang TH, Wang J, Lin S, Jin VX. Zhou Y, et al. Among authors: huang th. Genome Med. 2020 Aug 12;12(1):69. doi: 10.1186/s13073-020-00769-8. Genome Med. 2020. PMID: 32787954 Free PMC article.

2

Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray.

Jin VX, Leu YW, Liyanarachchi S, Sun H, Fan M, Nephew KP, Huang TH, Davuluri RV. Jin VX, et al. Among authors: huang th. Nucleic Acids Res. 2004 Dec 17;32(22):6627-35. doi: 10.1093/nar/gkh1005. Print 2004. Nucleic Acids Res. 2004. PMID: 15608294 Free PMC article.

3

HRTBLDb: an informative data resource for hormone receptors target binding loci.

Kennedy BA, Gao W, Huang TH, Jin VX. Kennedy BA, et al. Among authors: huang th. Nucleic Acids Res. 2010 Jan;38(Database issue):D676-81. doi: 10.1093/nar/gkp734. Epub 2009 Sep 22. Nucleic Acids Res. 2010. PMID: 19773424 Free PMC article.

4

Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data.

Gu F, Hsu HK, Hsu PY, Wu J, Ma Y, Parvin J, Huang TH, Jin VX. Gu F, et al. Among authors: huang th. BMC Syst Biol. 2010 Dec 17;4:170. doi: 10.1186/1752-0509-4-170. BMC Syst Biol. 2010. PMID: 21167036 Free PMC article.

5

Cancer omics: from regulatory networks to clinical outcomes.

Tang B, Hsu PY, Huang TH, Jin VX. Tang B, et al. Among authors: huang th. Cancer Lett. 2013 Nov 1;340(2):277-83. doi: 10.1016/j.canlet.2012.11.033. Epub 2012 Nov 29. Cancer Lett. 2013. PMID: 23201140 Review.

6

Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation.

Wang J, Lan X, Hsu PY, Hsu HK, Huang K, Parvin J, Huang TH, Jin VX. Wang J, et al. Among authors: huang k, huang th. BMC Genomics. 2013 Jan 31;14:70. doi: 10.1186/1471-2164-14-70. BMC Genomics. 2013. PMID: 23368971 Free PMC article.

7

Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1.

Ye Z, Chen Z, Sunkel B, Frietze S, Huang TH, Wang Q, Jin VX. Ye Z, et al. Among authors: huang th. Nucleic Acids Res. 2016 Sep 19;44(16):7540-54. doi: 10.1093/nar/gkw659. Epub 2016 Jul 25. Nucleic Acids Res. 2016. PMID: 27458208 Free PMC article.

8

Methyl-binding DNA capture Sequencing for Patient Tissues.

Jadhav RR, Wang YV, Hsu YT, Liu J, Garcia D, Lai Z, Huang TH, Jin VX. Jadhav RR, et al. Among authors: huang th. J Vis Exp. 2016 Oct 31;(116):54131. doi: 10.3791/54131. J Vis Exp. 2016. PMID: 27842364 Free PMC article.

9

Integration of DNA methylation and gene transcription across nineteen cell types reveals cell type-specific and genomic region-dependent regulatory patterns.

Tang B, Zhou Y, Wang CM, Huang TH, Jin VX. Tang B, et al. Among authors: huang th. Sci Rep. 2017 Jun 15;7(1):3626. doi: 10.1038/s41598-017-03837-z. Sci Rep. 2017. PMID: 28620196 Free PMC article.

10

MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.

Sun H, Palaniswamy SK, Pohar TT, Jin VX, Huang TH, Davuluri RV. Sun H, et al. Among authors: huang th. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D98-103. doi: 10.1093/nar/gkj096. Nucleic Acids Res. 2006. PMID: 16381984 Free PMC article.

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