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F2Dock: fast Fourier protein-protein docking.
Bajaj C, Chowdhury R, Siddavanahalli V. Bajaj C, et al. IEEE/ACM Trans Comput Biol Bioinform. 2011 Jan-Mar;8(1):45-58. doi: 10.1109/TCBB.2009.57. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 21071796 Free PMC article.
Protein-protein docking with F(2)Dock 2.0 and GB-rerank.
Chowdhury R, Rasheed M, Keidel D, Moussalem M, Olson A, Sanner M, Bajaj C. Chowdhury R, et al. PLoS One. 2013;8(3):e51307. doi: 10.1371/journal.pone.0051307. Epub 2013 Mar 6. PLoS One. 2013. PMID: 23483883 Free PMC article.
Cache-oblivious dynamic programming for bioinformatics.
Chowdhury RA, Le HS, Ramachandran V. Chowdhury RA, et al. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):495-510. doi: 10.1109/TCBB.2008.94. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20671320
Side-chain Packing Using SE(3)-Transformer.
Jindal A, Kotelnikov S, Padhorny D, Kozakov D, Zhu Y, Chowdhury R, Vajda S. Jindal A, et al. Pac Symp Biocomput. 2022;27:46-55. Pac Symp Biocomput. 2022. PMID: 34890135 Free PMC article.
68 results