Glass K - Search Results

1

Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues.

Lopes-Ramos CM, Chen CY, Kuijjer ML, Paulson JN, Sonawane AR, Fagny M, Platig J, Glass K, Quackenbush J, DeMeo DL. Lopes-Ramos CM, et al. Among authors: glass k. Cell Rep. 2020 Jun 23;31(12):107795. doi: 10.1016/j.celrep.2020.107795. Cell Rep. 2020. PMID: 32579922 Free PMC article.

2

Implications of functional similarity for gene regulatory interactions.

Glass K, Ott E, Losert W, Girvan M. Glass K, et al. J R Soc Interface. 2012 Jul 7;9(72):1625-36. doi: 10.1098/rsif.2011.0585. Epub 2012 Feb 1. J R Soc Interface. 2012. PMID: 22298814 Free PMC article.

3

Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis.

Xu J, Shao Z, Glass K, Bauer DE, Pinello L, Van Handel B, Hou S, Stamatoyannopoulos JA, Mikkola HK, Yuan GC, Orkin SH. Xu J, et al. Among authors: glass k. Dev Cell. 2012 Oct 16;23(4):796-811. doi: 10.1016/j.devcel.2012.09.003. Epub 2012 Oct 4. Dev Cell. 2012. PMID: 23041383 Free PMC article.

4

Passing messages between biological networks to refine predicted interactions.

Glass K, Huttenhower C, Quackenbush J, Yuan GC. Glass K, et al. PLoS One. 2013 May 31;8(5):e64832. doi: 10.1371/journal.pone.0064832. Print 2013. PLoS One. 2013. PMID: 23741402 Free PMC article.

5

Sexually-dimorphic targeting of functionally-related genes in COPD.

Glass K, Quackenbush J, Silverman EK, Celli B, Rennard SI, Yuan GC, DeMeo DL. Glass K, et al. BMC Syst Biol. 2014 Nov 28;8:118. doi: 10.1186/s12918-014-0118-y. BMC Syst Biol. 2014. PMID: 25431000 Free PMC article.

6

Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring.

Lao T, Glass K, Qiu W, Polverino F, Gupta K, Morrow J, Mancini JD, Vuong L, Perrella MA, Hersh CP, Owen CA, Quackenbush J, Yuan GC, Silverman EK, Zhou X. Lao T, et al. Among authors: glass k. Genome Med. 2015 Feb 14;7(1):12. doi: 10.1186/s13073-015-0137-3. eCollection 2015. Genome Med. 2015. PMID: 25763110 Free PMC article.

7

A network model for angiogenesis in ovarian cancer.

Glass K, Quackenbush J, Spentzos D, Haibe-Kains B, Yuan GC. Glass K, et al. BMC Bioinformatics. 2015 Apr 11;16:115. doi: 10.1186/s12859-015-0551-y. BMC Bioinformatics. 2015. PMID: 25888305 Free PMC article.

8

Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice.

Cloonan SM, Glass K, Laucho-Contreras ME, Bhashyam AR, Cervo M, Pabón MA, Konrad C, Polverino F, Siempos II, Perez E, Mizumura K, Ghosh MC, Parameswaran H, Williams NC, Rooney KT, Chen ZH, Goldklang MP, Yuan GC, Moore SC, Demeo DL, Rouault TA, D'Armiento JM, Schon EA, Manfredi G, Quackenbush J, Mahmood A, Silverman EK, Owen CA, Choi AM. Cloonan SM, et al. Among authors: glass k. Nat Med. 2016 Feb;22(2):163-74. doi: 10.1038/nm.4021. Epub 2016 Jan 11. Nat Med. 2016. PMID: 26752519 Free PMC article.

9

PyPanda: a Python package for gene regulatory network reconstruction.

van IJzendoorn DG, Glass K, Quackenbush J, Kuijjer ML. van IJzendoorn DG, et al. Among authors: glass k. Bioinformatics. 2016 Nov 1;32(21):3363-3365. doi: 10.1093/bioinformatics/btw422. Epub 2016 Jul 10. Bioinformatics. 2016. PMID: 27402905 Free PMC article.

10

Diet-induced weight loss leads to a switch in gene regulatory network control in the rectal mucosa.

Vargas AJ, Quackenbush J, Glass K. Vargas AJ, et al. Among authors: glass k. Genomics. 2016 Oct;108(3-4):126-133. doi: 10.1016/j.ygeno.2016.08.001. Epub 2016 Aug 11. Genomics. 2016. PMID: 27524493 Free PMC article.

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