Logacheva MD - Search Results

1

Studying RNA-DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics.

Gavrilov AA, Zharikova AA, Galitsyna AA, Luzhin AV, Rubanova NM, Golov AK, Petrova NV, Logacheva MD, Kantidze OL, Ulianov SV, Magnitov MD, Mironov AA, Razin SV. Gavrilov AA, et al. Among authors: logacheva md. Nucleic Acids Res. 2020 Jul 9;48(12):6699-6714. doi: 10.1093/nar/gkaa457. Nucleic Acids Res. 2020. PMID: 32479626 Free PMC article.

2

The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes.

Gushchanskaya ES, Artemov AV, Ulyanov SV, Logacheva MD, Penin AA, Kotova ES, Akopov SB, Nikolaev LG, Iarovaia OV, Sverdlov ED, Gavrilov AA, Razin SV. Gushchanskaya ES, et al. Among authors: logacheva md. Epigenetics. 2014 Jul;9(7):951-63. doi: 10.4161/epi.28794. Epub 2014 Apr 15. Epigenetics. 2014. PMID: 24736527 Free PMC article.

3

[Spatial organization of house-keeping genes in interphase nuclei].

Gushchanskaia ES, Artemov AA, Ul'ianov SV, Penin AA, Logacheva MD, Razin SV, Gavrilov AA. Gushchanskaia ES, et al. Among authors: logacheva md. Mol Biol (Mosk). 2014 Nov-Dec;48(6):1008-18. Mol Biol (Mosk). 2014. PMID: 25845242 Free article. Russian.

4

The Cas6e ribonuclease is not required for interference and adaptation by the E. coli type I-E CRISPR-Cas system.

Semenova E, Kuznedelov K, Datsenko KA, Boudry PM, Savitskaya EE, Medvedeva S, Beloglazova N, Logacheva M, Yakunin AF, Severinov K. Semenova E, et al. Nucleic Acids Res. 2015 Jul 13;43(12):6049-61. doi: 10.1093/nar/gkv546. Epub 2015 May 26. Nucleic Acids Res. 2015. PMID: 26013814 Free PMC article.

5

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.

Ulianov SV, Khrameeva EE, Gavrilov AA, Flyamer IM, Kos P, Mikhaleva EA, Penin AA, Logacheva MD, Imakaev MV, Chertovich A, Gelfand MS, Shevelyov YY, Razin SV. Ulianov SV, et al. Among authors: logacheva md. Genome Res. 2016 Jan;26(1):70-84. doi: 10.1101/gr.196006.115. Epub 2015 Oct 30. Genome Res. 2016. PMID: 26518482 Free PMC article.

6

Foreign DNA acquisition by the I-F CRISPR-Cas system requires all components of the interference machinery.

Vorontsova D, Datsenko KA, Medvedeva S, Bondy-Denomy J, Savitskaya EE, Pougach K, Logacheva M, Wiedenheft B, Davidson AR, Severinov K, Semenova E. Vorontsova D, et al. Nucleic Acids Res. 2015 Dec 15;43(22):10848-60. doi: 10.1093/nar/gkv1261. Epub 2015 Nov 19. Nucleic Acids Res. 2015. PMID: 26586803 Free PMC article.

7

Spacer-length DNA intermediates are associated with Cas1 in cells undergoing primed CRISPR adaptation.

Musharova O, Klimuk E, Datsenko KA, Metlitskaya A, Logacheva M, Semenova E, Severinov K, Savitskaya E. Musharova O, et al. Nucleic Acids Res. 2017 Apr 7;45(6):3297-3307. doi: 10.1093/nar/gkx097. Nucleic Acids Res. 2017. PMID: 28204574 Free PMC article.

8

Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Gerasimov ES, Gasparyan AA, Kaurov I, Tichý B, Logacheva MD, Kolesnikov AA, Lukeš J, Yurchenko V, Zimmer SL, Flegontov P. Gerasimov ES, et al. Among authors: logacheva md. Nucleic Acids Res. 2018 Jan 25;46(2):765-781. doi: 10.1093/nar/gkx1202. Nucleic Acids Res. 2018. PMID: 29220521 Free PMC article.

9

FACS Isolation of Viable Cells in Different Cell Cycle Stages from Asynchronous Culture for RNA Sequencing.

Potashnikova DM, Golyshev SA, Penin AA, Logacheva MD, Klepikova AV, Zharikova AA, Mironov AA, Sheval EV, Vorobjev IA. Potashnikova DM, et al. Among authors: logacheva md. Methods Mol Biol. 2018;1745:315-335. doi: 10.1007/978-1-4939-7680-5_18. Methods Mol Biol. 2018. PMID: 29476477

10

Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome.

Sutormin D, Rubanova N, Logacheva M, Ghilarov D, Severinov K. Sutormin D, et al. Nucleic Acids Res. 2019 Feb 20;47(3):1373-1388. doi: 10.1093/nar/gky1222. Nucleic Acids Res. 2019. PMID: 30517674 Free PMC article.

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