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ENANO: Encoder for NANOpore FASTQ files.
Dufort Y Álvarez G, Seroussi G, Smircich P, Sotelo J, Ochoa I, Martín Á. Dufort Y Álvarez G, et al. Among authors: ochoa i. Bioinformatics. 2020 Aug 15;36(16):4506-4507. doi: 10.1093/bioinformatics/btaa551. Bioinformatics. 2020. PMID: 32470109
iDoComp: a compression scheme for assembled genomes.
Ochoa I, Hernaez M, Weissman T. Ochoa I, et al. Bioinformatics. 2015 Mar 1;31(5):626-33. doi: 10.1093/bioinformatics/btu698. Epub 2014 Oct 24. Bioinformatics. 2015. PMID: 25344501 Free PMC article.
QVZ: lossy compression of quality values.
Malysa G, Hernaez M, Ochoa I, Rao M, Ganesan K, Weissman T. Malysa G, et al. Among authors: ochoa i. Bioinformatics. 2015 Oct 1;31(19):3122-9. doi: 10.1093/bioinformatics/btv330. Epub 2015 May 28. Bioinformatics. 2015. PMID: 26026138 Free PMC article.
FaStore: a space-saving solution for raw sequencing data.
Roguski L, Ochoa I, Hernaez M, Deorowicz S. Roguski L, et al. Among authors: ochoa i. Bioinformatics. 2018 Aug 15;34(16):2748-2756. doi: 10.1093/bioinformatics/bty205. Bioinformatics. 2018. PMID: 29617939
SPRING: a next-generation compressor for FASTQ data.
Chandak S, Tatwawadi K, Ochoa I, Hernaez M, Weissman T. Chandak S, et al. Among authors: ochoa i. Bioinformatics. 2019 Aug 1;35(15):2674-2676. doi: 10.1093/bioinformatics/bty1015. Bioinformatics. 2019. PMID: 30535063 Free PMC article.
GABAC: an arithmetic coding solution for genomic data.
Voges J, Paridaens T, Müntefering F, Mainzer LS, Bliss B, Yang M, Ochoa I, Fostier J, Ostermann J, Hernaez M. Voges J, et al. Among authors: ochoa i. Bioinformatics. 2020 Apr 1;36(7):2275-2277. doi: 10.1093/bioinformatics/btz922. Bioinformatics. 2020. PMID: 31830243 Free PMC article.
292 results