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Using case-level context to classify cancer pathology reports.
Gao S, Alawad M, Schaefferkoetter N, Penberthy L, Wu XC, Durbin EB, Coyle L, Ramanathan A, Tourassi G. Gao S, et al. Among authors: ramanathan a. PLoS One. 2020 May 12;15(5):e0232840. doi: 10.1371/journal.pone.0232840. eCollection 2020. PLoS One. 2020. PMID: 32396579 Free PMC article.
Deep clustering of protein folding simulations.
Bhowmik D, Gao S, Young MT, Ramanathan A. Bhowmik D, et al. Among authors: ramanathan a. BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):484. doi: 10.1186/s12859-018-2507-5. BMC Bioinformatics. 2018. PMID: 30577777 Free PMC article.
Classifying cancer pathology reports with hierarchical self-attention networks.
Gao S, Qiu JX, Alawad M, Hinkle JD, Schaefferkoetter N, Yoon HJ, Christian B, Fearn PA, Penberthy L, Wu XC, Coyle L, Tourassi G, Ramanathan A. Gao S, et al. Among authors: ramanathan a. Artif Intell Med. 2019 Nov;101:101726. doi: 10.1016/j.artmed.2019.101726. Epub 2019 Oct 15. Artif Intell Med. 2019. PMID: 31813492 Free article.
Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.
Ramanathan A, Savol AJ, Agarwal PK, Chennubhotla CS. Ramanathan A, et al. Proteins. 2012 Nov;80(11):2536-51. doi: 10.1002/prot.24135. Epub 2012 Aug 8. Proteins. 2012. PMID: 22733562 Free PMC article.
Because post-simulation analyses of such large trajectory datasets can be a limiting factor in obtaining biological insights, there is an emerging need to identify key dynamical events and relating these events to the biological function online, that is, as simulations are …
Because post-simulation analyses of such large trajectory datasets can be a limiting factor in obtaining biological insights, there i …
The Biosurveillance Analytics Resource Directory (BARD): Facilitating the Use of Epidemiological Models for Infectious Disease Surveillance.
Margevicius KJ, Generous N, Abeyta E, Althouse B, Burkom H, Castro L, Daughton A, Del Valle SY, Fairchild G, Hyman JM, Kiang R, Morse AP, Pancerella CM, Pullum L, Ramanathan A, Schlegelmilch J, Scott A, Taylor-McCabe KJ, Vespignani A, Deshpande A. Margevicius KJ, et al. Among authors: ramanathan a. PLoS One. 2016 Jan 28;11(1):e0146600. doi: 10.1371/journal.pone.0146600. eCollection 2016. PLoS One. 2016. PMID: 26820405 Free PMC article.
Mechanism of glucocerebrosidase activation and dysfunction in Gaucher disease unraveled by molecular dynamics and deep learning.
Romero R, Ramanathan A, Yuen T, Bhowmik D, Mathew M, Munshi LB, Javaid S, Bloch M, Lizneva D, Rahimova A, Khan A, Taneja C, Kim SM, Sun L, New MI, Haider S, Zaidi M. Romero R, et al. Among authors: ramanathan a. Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):5086-5095. doi: 10.1073/pnas.1818411116. Epub 2019 Feb 26. Proc Natl Acad Sci U S A. 2019. PMID: 30808805 Free PMC article.
Biochemical and structural analyses reveal that the tumor suppressor neurofibromin (NF1) forms a high-affinity dimer.
Sherekar M, Han SW, Ghirlando R, Messing S, Drew M, Rabara D, Waybright T, Juneja P, O'Neill H, Stanley CB, Bhowmik D, Ramanathan A, Subramaniam S, Nissley DV, Gillette W, McCormick F, Esposito D. Sherekar M, et al. Among authors: ramanathan a. J Biol Chem. 2020 Jan 24;295(4):1105-1119. doi: 10.1074/jbc.RA119.010934. Epub 2019 Dec 13. J Biol Chem. 2020. PMID: 31836666 Free PMC article.
427 results