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Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.
Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M. Mavian C, et al. Among authors: gascuel o. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12522-12523. doi: 10.1073/pnas.2007295117. Epub 2020 May 7. Proc Natl Acad Sci U S A. 2020. PMID: 32381734 Free PMC article. No abstract available.
Searching for virus phylotypes.
Chevenet F, Jung M, Peeters M, de Oliveira T, Gascuel O. Chevenet F, et al. Among authors: gascuel o. Bioinformatics. 2013 Mar 1;29(5):561-70. doi: 10.1093/bioinformatics/btt010. Epub 2013 Jan 17. Bioinformatics. 2013. PMID: 23329414 Free PMC article.
Renewing Felsenstein's phylogenetic bootstrap in the era of big data.
Lemoine F, Domelevo Entfellner JB, Wilkinson E, Correia D, Dávila Felipe M, De Oliveira T, Gascuel O. Lemoine F, et al. Among authors: gascuel o. Nature. 2018 Apr;556(7702):452-456. doi: 10.1038/s41586-018-0043-0. Epub 2018 Apr 18. Nature. 2018. PMID: 29670290 Free PMC article.
Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal.
Seabra SG, Libin PJK, Theys K, Zhukova A, Potter BI, Nebenzahl-Guimaraes H, Gorbalenya AE, Sidorov IA, Pimentel V, Pingarilho M, de Vasconcelos ATR, Dellicour S, Khouri R, Gascuel O, Vandamme AM, Baele G, Cuypers L, Abecasis AB. Seabra SG, et al. Among authors: gascuel o. Virus Evol. 2022 Mar 29;8(1):veac029. doi: 10.1093/ve/veac029. eCollection 2022. Virus Evol. 2022. PMID: 35478717 Free PMC article.
Genomics, biogeography, and the diversification of placental mammals.
Wildman DE, Uddin M, Opazo JC, Liu G, Lefort V, Guindon S, Gascuel O, Grossman LI, Romero R, Goodman M. Wildman DE, et al. Among authors: gascuel o. Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14395-400. doi: 10.1073/pnas.0704342104. Epub 2007 Aug 29. Proc Natl Acad Sci U S A. 2007. PMID: 17728403 Free PMC article.
[The tenth gene of HIV].
Cassan É, Arigon-Chifolleau AM, Mesnard JM, Gros A, Gascuel O. Cassan É, et al. Among authors: gascuel o. Med Sci (Paris). 2017 May;33(5):484-485. doi: 10.1051/medsci/20173305008. Epub 2017 Jun 14. Med Sci (Paris). 2017. PMID: 28612720 Free article. French. No abstract available.
115 results