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Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization.
Trzaskoma P, Ruszczycki B, Lee B, Pels KK, Krawczyk K, Bokota G, Szczepankiewicz AA, Aaron J, Walczak A, Śliwińska MA, Magalska A, Kadlof M, Wolny A, Parteka Z, Arabasz S, Kiss-Arabasz M, Plewczyński D, Ruan Y, Wilczyński GM. Trzaskoma P, et al. Among authors: plewczynski d. Nat Commun. 2020 May 1;11(1):2120. doi: 10.1038/s41467-020-15987-2. Nat Commun. 2020. PMID: 32358536 Free PMC article.
CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.
Tang Z, Luo OJ, Li X, Zheng M, Zhu JJ, Szalaj P, Trzaskoma P, Magalska A, Wlodarczyk J, Ruszczycki B, Michalski P, Piecuch E, Wang P, Wang D, Tian SZ, Penrad-Mobayed M, Sachs LM, Ruan X, Wei CL, Liu ET, Wilczynski GM, Plewczynski D, Li G, Ruan Y. Tang Z, et al. Among authors: plewczynski d. Cell. 2015 Dec 17;163(7):1611-27. doi: 10.1016/j.cell.2015.11.024. Epub 2015 Dec 10. Cell. 2015. PMID: 26686651 Free PMC article.
3D-GNOME: an integrated web service for structural modeling of the 3D genome.
Szalaj P, Michalski PJ, Wróblewski P, Tang Z, Kadlof M, Mazzocco G, Ruan Y, Plewczynski D. Szalaj P, et al. Among authors: plewczynski d. Nucleic Acids Res. 2016 Jul 8;44(W1):W288-93. doi: 10.1093/nar/gkw437. Epub 2016 May 16. Nucleic Acids Res. 2016. PMID: 27185892 Free PMC article.
Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis.
Bokota G, Magnowska M, Kuśmierczyk T, Łukasik M, Roszkowska M, Plewczynski D. Bokota G, et al. Among authors: plewczynski d. Front Comput Neurosci. 2016 Dec 23;10:140. doi: 10.3389/fncom.2016.00140. eCollection 2016. Front Comput Neurosci. 2016. PMID: 28066226 Free PMC article.
The source code of our software is freely available for non-commercial use. CONTACT: d.plewczynski@cent.uw.edu.pl....
The source code of our software is freely available for non-commercial use. CONTACT: d.plewczynski@cent.uw.edu.pl....
147 results