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Simultaneous quantification of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq.
Nat Protoc. 2020 Jun;15(6):1922-1953. doi: 10.1038/s41596-020-0314-8. Epub 2020 Apr 29.
Nat Protoc. 2020.
PMID: 32350457
Free PMC article.
Genome-lamina interactions are established de novo in the early mouse embryo.
Borsos M, Perricone SM, Schauer T, Pontabry J, de Luca KL, de Vries SS, Ruiz-Morales ER, Torres-Padilla ME, Kind J.
Borsos M, et al. Among authors: de luca kl.
Nature. 2019 May;569(7758):729-733. doi: 10.1038/s41586-019-1233-0. Epub 2019 May 22.
Nature. 2019.
PMID: 31118510
Free PMC article.
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Simultaneous quantification of protein-DNA contacts and transcriptomes in single cells.
Rooijers K, Markodimitraki CM, Rang FJ, de Vries SS, Chialastri A, de Luca KL, Mooijman D, Dey SS, Kind J.
Rooijers K, et al. Among authors: de luca kl.
Nat Biotechnol. 2019 Jul;37(7):766-772. doi: 10.1038/s41587-019-0150-y. Epub 2019 Jun 17.
Nat Biotechnol. 2019.
PMID: 31209373
Free PMC article.
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Single-Cell DamID to Capture Contacts Between DNA and the Nuclear Lamina in Individual Mammalian Cells.
de Luca KL, Kind J.
de Luca KL, et al.
Methods Mol Biol. 2021;2157:159-172. doi: 10.1007/978-1-0716-0664-3_9.
Methods Mol Biol. 2021.
PMID: 32820403
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Single-cell profiling of transcriptome and histone modifications with EpiDamID.
Rang FJ, de Luca KL, de Vries SS, Valdes-Quezada C, Boele E, Nguyen PD, Guerreiro I, Sato Y, Kimura H, Bakkers J, Kind J.
Rang FJ, et al. Among authors: de luca kl.
Mol Cell. 2022 May 19;82(10):1956-1970.e14. doi: 10.1016/j.molcel.2022.03.009. Epub 2022 Apr 1.
Mol Cell. 2022.
PMID: 35366395
Free PMC article.
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Nuclear chromosome locations dictate segregation error frequencies.
Klaasen SJ, Truong MA, van Jaarsveld RH, Koprivec I, Štimac V, de Vries SG, Risteski P, Kodba S, Vukušić K, de Luca KL, Marques JF, Gerrits EM, Bakker B, Foijer F, Kind J, Tolić IM, Lens SMA, Kops GJPL.
Klaasen SJ, et al. Among authors: de luca kl.
Nature. 2022 Jul;607(7919):604-609. doi: 10.1038/s41586-022-04938-0. Epub 2022 Jul 13.
Nature. 2022.
PMID: 35831506
Free PMC article.
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Combinatorial single-cell profiling of major chromatin types with MAbID.
Lochs SJA, van der Weide RH, de Luca KL, Korthout T, van Beek RE, Kimura H, Kind J.
Lochs SJA, et al. Among authors: de luca kl.
Nat Methods. 2024 Jan;21(1):72-82. doi: 10.1038/s41592-023-02090-9. Epub 2023 Dec 4.
Nat Methods. 2024.
PMID: 38049699
Free PMC article.
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Genomic and functional overlap between somatic and germline chromosomal rearrangements.
van Heesch S, Simonis M, van Roosmalen MJ, Pillalamarri V, Brand H, Kuijk EW, de Luca KL, Lansu N, Braat AK, Menelaou A, Hao W, Korving J, Snijder S, van der Veken LT, Hochstenbach R, Knegt AC, Duran K, Renkens I, Alekozai N, Jager M, Vergult S, Menten B, de Bruijn E, Boymans S, Ippel E, van Binsbergen E, Talkowski ME, Lichtenbelt K, Cuppen E, Kloosterman WP.
van Heesch S, et al. Among authors: de luca kl.
Cell Rep. 2014 Dec 24;9(6):2001-10. doi: 10.1016/j.celrep.2014.11.022. Epub 2014 Dec 11.
Cell Rep. 2014.
PMID: 25497101
Free article.
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