Dey SS - Search Results

1

Simultaneous quantification of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq.

Markodimitraki CM, Rang FJ, Rooijers K, de Vries SS, Chialastri A, de Luca KL, Lochs SJA, Mooijman D, Dey SS, Kind J. Markodimitraki CM, et al. Among authors: dey ss. Nat Protoc. 2020 Jun;15(6):1922-1953. doi: 10.1038/s41596-020-0314-8. Epub 2020 Apr 29. Nat Protoc. 2020. PMID: 32350457 Free PMC article.

2

Integrated genome and transcriptome sequencing of the same cell.

Dey SS, Kester L, Spanjaard B, Bienko M, van Oudenaarden A. Dey SS, et al. Nat Biotechnol. 2015 Mar;33(3):285-289. doi: 10.1038/nbt.3129. Epub 2015 Jan 19. Nat Biotechnol. 2015. PMID: 25599178 Free PMC article.

3

Genome-wide maps of nuclear lamina interactions in single human cells.

Kind J, Pagie L, de Vries SS, Nahidiazar L, Dey SS, Bienko M, Zhan Y, Lajoie B, de Graaf CA, Amendola M, Fudenberg G, Imakaev M, Mirny LA, Jalink K, Dekker J, van Oudenaarden A, van Steensel B. Kind J, et al. Among authors: dey ss. Cell. 2015 Sep 24;163(1):134-47. doi: 10.1016/j.cell.2015.08.040. Epub 2015 Sep 10. Cell. 2015. PMID: 26365489 Free PMC article.

4

Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction.

Mooijman D, Dey SS, Boisset JC, Crosetto N, van Oudenaarden A. Mooijman D, et al. Among authors: dey ss. Nat Biotechnol. 2016 Aug;34(8):852-6. doi: 10.1038/nbt.3598. Epub 2016 Jun 27. Nat Biotechnol. 2016. PMID: 27347753

5

Simultaneous quantification of protein-DNA contacts and transcriptomes in single cells.

Rooijers K, Markodimitraki CM, Rang FJ, de Vries SS, Chialastri A, de Luca KL, Mooijman D, Dey SS, Kind J. Rooijers K, et al. Among authors: dey ss. Nat Biotechnol. 2019 Jul;37(7):766-772. doi: 10.1038/s41587-019-0150-y. Epub 2019 Jun 17. Nat Biotechnol. 2019. PMID: 31209373 Free PMC article.

6

Control over single-cell distribution of G1 lengths by WNT governs pluripotency.

Jang J, Han D, Golkaram M, Audouard M, Liu G, Bridges D, Hellander S, Chialastri A, Dey SS, Petzold LR, Kosik KS. Jang J, et al. Among authors: dey ss. PLoS Biol. 2019 Sep 26;17(9):e3000453. doi: 10.1371/journal.pbio.3000453. eCollection 2019 Sep. PLoS Biol. 2019. PMID: 31557150 Free PMC article.

7

An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure.

Gell JJ, Liu W, Sosa E, Chialastri A, Hancock G, Tao Y, Wamaitha SE, Bower G, Dey SS, Clark AT. Gell JJ, et al. Among authors: dey ss. Stem Cell Reports. 2020 Mar 10;14(3):433-446. doi: 10.1016/j.stemcr.2020.01.009. Epub 2020 Feb 13. Stem Cell Reports. 2020. PMID: 32059791 Free PMC article.

8

Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development.

Sen M, Mooijman D, Chialastri A, Boisset JC, Popovic M, Heindryckx B, Chuva de Sousa Lopes SM, Dey SS, van Oudenaarden A. Sen M, et al. Among authors: dey ss. Nat Commun. 2021 Feb 24;12(1):1286. doi: 10.1038/s41467-021-21532-6. Nat Commun. 2021. PMID: 33627650 Free PMC article.

9

A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing.

Wangsanuwat C, Chialastri A, Aldeguer JF, Rivron NC, Dey SS. Wangsanuwat C, et al. Among authors: dey ss. Cell Rep Methods. 2021 Aug 23;1(4):100060. doi: 10.1016/j.crmeth.2021.100060. Epub 2021 Jul 30. Cell Rep Methods. 2021. PMID: 34590075 Free PMC article.

10

Integrated single-cell sequencing of 5-hydroxymethylcytosine and genomic DNA using scH&G-seq.

Chialastri A, Wangsanuwat C, Dey SS. Chialastri A, et al. Among authors: dey ss. STAR Protoc. 2021 Dec 11;2(4):101016. doi: 10.1016/j.xpro.2021.101016. eCollection 2021 Dec 17. STAR Protoc. 2021. PMID: 34950891 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

54 results

Search Page