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Evaluating DCA-based method performances for RNA contact prediction by a well-curated data set.
RNA. 2020 Jul;26(7):794-802. doi: 10.1261/rna.073809.119. Epub 2020 Apr 10.
RNA. 2020.
PMID: 32276988
Free PMC article.
Biomolecular coevolution and its applications: Going from structure prediction toward signaling, epistasis, and function.
Zerihun MB, Schug A.
Zerihun MB, et al.
Biochem Soc Trans. 2017 Dec 15;45(6):1253-1261. doi: 10.1042/BST20170063. Epub 2017 Oct 20.
Biochem Soc Trans. 2017.
PMID: 29054926
Review.
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pydca v1.0: a comprehensive software for direct coupling analysis of RNA and protein sequences.
Zerihun MB, Pucci F, Peter EK, Schug A.
Zerihun MB, et al.
Bioinformatics. 2020 Apr 1;36(7):2264-2265. doi: 10.1093/bioinformatics/btz892.
Bioinformatics. 2020.
PMID: 31778142
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CoCoNet-boosting RNA contact prediction by convolutional neural networks.
Zerihun MB, Pucci F, Schug A.
Zerihun MB, et al.
Nucleic Acids Res. 2021 Dec 16;49(22):12661-12672. doi: 10.1093/nar/gkab1144.
Nucleic Acids Res. 2021.
PMID: 34871451
Free PMC article.
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pycofitness-Evaluating the fitness landscape of RNA and protein sequences.
Pucci F, Zerihun MB, Rooman M, Schug A.
Pucci F, et al. Among authors: zerihun mb.
Bioinformatics. 2024 Feb 1;40(2):btae074. doi: 10.1093/bioinformatics/btae074.
Bioinformatics. 2024.
PMID: 38335928
Free PMC article.
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Effect of replication on epigenetic memory and consequences on gene transcription.
Zerihun MB, Vaillant C, Jost D.
Zerihun MB, et al.
Phys Biol. 2015 Apr 17;12(2):026007. doi: 10.1088/1478-3975/12/2/026007.
Phys Biol. 2015.
PMID: 25884278
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