Tomii K - Search Results

1

Comprehensive analysis of PPARγ agonist activities of stereo-, regio-, and enantio-isomers of hydroxyoctadecadienoic acids.

Umeno A, Sakashita M, Sugino S, Murotomi K, Okuzawa T, Morita N, Tomii K, Tsuchiya Y, Yamasaki K, Horie M, Takahara K, Yoshida Y. Umeno A, et al. Among authors: tomii k. Biosci Rep. 2020 Apr 30;40(4):BSR20193767. doi: 10.1042/BSR20193767. Biosci Rep. 2020. PMID: 32266936 Free PMC article.

2

Neural networks for protein structure and function prediction and dynamic analysis.

Tsuchiya Y, Tomii K. Tsuchiya Y, et al. Among authors: tomii k. Biophys Rev. 2020 Apr;12(2):569-573. doi: 10.1007/s12551-020-00685-6. Epub 2020 Mar 12. Biophys Rev. 2020. PMID: 32166610 Free PMC article.

3

Structural Modeling and Ligand-Binding Prediction for Analysis of Structure-Unknown and Function-Unknown Proteins Using FORTE Alignment and PoSSuM Pocket Search.

Tsuchiya Y, Tomii K. Tsuchiya Y, et al. Among authors: tomii k. Methods Mol Biol. 2020;2165:1-11. doi: 10.1007/978-1-0716-0708-4_1. Methods Mol Biol. 2020. PMID: 32621216

4

Protein-protein interaction prediction methods: from docking-based to AI-based approaches.

Tsuchiya Y, Yamamori Y, Tomii K. Tsuchiya Y, et al. Among authors: tomii k. Biophys Rev. 2022 Dec 17;14(6):1341-1348. doi: 10.1007/s12551-022-01032-7. eCollection 2022 Dec. Biophys Rev. 2022. PMID: 36570321 Free PMC article. Review.

5

PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins.

Tsuchiya Y, Yonezawa T, Yamamori Y, Inoura H, Osawa M, Ikeda K, Tomii K. Tsuchiya Y, et al. Among authors: tomii k. J Chem Inf Model. 2023 Dec 11;63(23):7578-7587. doi: 10.1021/acs.jcim.3c01405. Epub 2023 Nov 28. J Chem Inf Model. 2023. PMID: 38016694 Free PMC article.

6

Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals.

Fukasawa Y, Tomii K. Fukasawa Y, et al. Among authors: tomii k. Sci Rep. 2019 Aug 30;9(1):12603. doi: 10.1038/s41598-019-48913-8. Sci Rep. 2019. PMID: 31471543 Free PMC article.

7

Distinct immune cell dynamics correlate with the immunogenicity and reactogenicity of SARS-CoV-2 mRNA vaccine.

Takano T, Morikawa M, Adachi Y, Kabasawa K, Sax N, Moriyama S, Sun L, Isogawa M, Nishiyama A, Onodera T, Terahara K, Tonouchi K, Nishimura M, Tomii K, Yamashita K, Matsumura T, Shinkai M, Takahashi Y. Takano T, et al. Among authors: tomii k. Cell Rep Med. 2022 May 17;3(5):100631. doi: 10.1016/j.xcrm.2022.100631. Epub 2022 Apr 22. Cell Rep Med. 2022. PMID: 35545084 Free PMC article.

8

A novel Mitosomal β-barrel Outer Membrane Protein in Entamoeba.

Santos HJ, Imai K, Makiuchi T, Tomii K, Horton P, Nozawa A, Ibrahim M, Tozawa Y, Nozaki T. Santos HJ, et al. Among authors: tomii k. Sci Rep. 2015 Feb 25;5:8545. doi: 10.1038/srep08545. Sci Rep. 2015. PMID: 25711150 Free PMC article.

9

A Novel Antiviral Target Structure Involved in the RNA Binding, Dimerization, and Nuclear Export Functions of the Influenza A Virus Nucleoprotein.

Kakisaka M, Sasaki Y, Yamada K, Kondoh Y, Hikono H, Osada H, Tomii K, Saito T, Aida Y. Kakisaka M, et al. Among authors: tomii k. PLoS Pathog. 2015 Jul 29;11(7):e1005062. doi: 10.1371/journal.ppat.1005062. eCollection 2015 Jul. PLoS Pathog. 2015. PMID: 26222066 Free PMC article.

10

Identification of hepta-histidine as a candidate drug for Huntington's disease by in silico-in vitro- in vivo-integrated screens of chemical libraries.

Imamura T, Fujita K, Tagawa K, Ikura T, Chen X, Homma H, Tamura T, Mao Y, Taniguchi JB, Motoki K, Nakabayashi M, Ito N, Yamada K, Tomii K, Okano H, Kaye J, Finkbeiner S, Okazawa H. Imamura T, et al. Among authors: tomii k. Sci Rep. 2016 Sep 22;6:33861. doi: 10.1038/srep33861. Sci Rep. 2016. PMID: 27653664 Free PMC article.

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