Gustafsson J - Search Results

1

Robinson JL, Kocabaş P, Wang H, Cholley PE, Cook D, Nilsson A, Anton M, Ferreira R, Domenzain I, Billa V, Limeta A, Hedin A, Gustafsson J, Kerkhoven EJ, Svensson LT, Palsson BO, Mardinoglu A, Hansson L, Uhlén M, Nielsen J. Robinson JL, et al. Among authors: gustafsson j. Sci Signal. 2020 Mar 24;13(624):eaaz1482. doi: 10.1126/scisignal.aaz1482. Sci Signal. 2020. PMID: 32209698 Free PMC article.

2

Sources of variation in cell-type RNA-Seq profiles.

Gustafsson J, Held F, Robinson JL, Björnson E, Jörnsten R, Nielsen J. Gustafsson J, et al. PLoS One. 2020 Sep 21;15(9):e0239495. doi: 10.1371/journal.pone.0239495. eCollection 2020. PLoS One. 2020. PMID: 32956417 Free PMC article.

3

DSAVE: Detection of misclassified cells in single-cell RNA-Seq data.

Gustafsson J, Robinson J, Inda-Díaz JS, Björnson E, Jörnsten R, Nielsen J. Gustafsson J, et al. PLoS One. 2020 Dec 3;15(12):e0243360. doi: 10.1371/journal.pone.0243360. eCollection 2020. PLoS One. 2020. PMID: 33270740 Free PMC article.

4

BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq.

Gustafsson J, Robinson J, Nielsen J, Pachter L. Gustafsson J, et al. Genome Biol. 2021 Jun 8;22(1):174. doi: 10.1186/s13059-021-02386-z. Genome Biol. 2021. PMID: 34103073 Free PMC article.

5

Genome-scale metabolic network reconstruction of model animals as a platform for translational research.

Wang H, Robinson JL, Kocabas P, Gustafsson J, Anton M, Cholley PE, Huang S, Gobom J, Svensson T, Uhlen M, Zetterberg H, Nielsen J. Wang H, et al. Among authors: gustafsson j. Proc Natl Acad Sci U S A. 2021 Jul 27;118(30):e2102344118. doi: 10.1073/pnas.2102344118. Proc Natl Acad Sci U S A. 2021. PMID: 34282017 Free PMC article.

6

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data.

Gustafsson J, Anton M, Roshanzamir F, Jörnsten R, Kerkhoven EJ, Robinson JL, Nielsen J. Gustafsson J, et al. Proc Natl Acad Sci U S A. 2023 Feb 7;120(6):e2217868120. doi: 10.1073/pnas.2217868120. Epub 2023 Jan 31. Proc Natl Acad Sci U S A. 2023. PMID: 36719923 Free PMC article.

7

Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0.

Chen Y, Gustafsson J, Tafur Rangel A, Anton M, Domenzain I, Kittikunapong C, Li F, Yuan L, Nielsen J, Kerkhoven EJ. Chen Y, et al. Among authors: gustafsson j. Nat Protoc. 2024 Mar;19(3):629-667. doi: 10.1038/s41596-023-00931-7. Epub 2024 Jan 18. Nat Protoc. 2024. PMID: 38238583 Review.

8

Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport.

Gustafsson J, Robinson JL, Zetterberg H, Nielsen J. Gustafsson J, et al. Proc Natl Acad Sci U S A. 2024 Feb 13;121(7):e2305035121. doi: 10.1073/pnas.2305035121. Epub 2024 Feb 5. Proc Natl Acad Sci U S A. 2024. PMID: 38315844 Free PMC article.

9

Single-cell omics analysis with genome-scale metabolic modeling.

Chen Y, Gustafsson J, Yang J, Nielsen J, Kerkhoven EJ. Chen Y, et al. Among authors: gustafsson j. Curr Opin Biotechnol. 2024 Apr;86:103078. doi: 10.1016/j.copbio.2024.103078. Epub 2024 Feb 15. Curr Opin Biotechnol. 2024. PMID: 38359604 Free article. Review.

10

Metabolic collaboration between cells in the tumor microenvironment has a negligible effect on tumor growth.

Gustafsson J, Roshanzamir F, Hagnestål A, Patel SM, Daudu OI, Becker DF, Robinson JL, Nielsen J. Gustafsson J, et al. Innovation (Camb). 2024 Jan 30;5(2):100583. doi: 10.1016/j.xinn.2024.100583. eCollection 2024 Mar 4. Innovation (Camb). 2024. PMID: 38445018 Free PMC article.

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