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Cell-in-the-loop pattern formation with optogenetically emulated cell-to-cell signaling.
Nat Commun. 2020 Mar 13;11(1):1355. doi: 10.1038/s41467-020-15166-3.
Nat Commun. 2020.
PMID: 32170129
Free PMC article.
An Optogenetic Platform for Real-Time, Single-Cell Interrogation of Stochastic Transcriptional Regulation.
Rullan M, Benzinger D, Schmidt GW, Milias-Argeitis A, Khammash M.
Rullan M, et al. Among authors: benzinger d.
Mol Cell. 2018 May 17;70(4):745-756.e6. doi: 10.1016/j.molcel.2018.04.012.
Mol Cell. 2018.
PMID: 29775585
Free PMC article.
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Principles of Systems Biology, No. 30.
Garcia HG, Benzinger D, Rullan M, Milias-Argeitis A, Khammash M, Deutschbauer AM, Langdon EM, Gladfelter AS.
Garcia HG, et al. Among authors: benzinger d.
Cell Syst. 2018 Jul 25;7(1):1-2. doi: 10.1016/j.cels.2018.07.002.
Cell Syst. 2018.
PMID: 30048618
Free article.
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Pulsatile inputs achieve tunable attenuation of gene expression variability and graded multi-gene regulation.
Benzinger D, Khammash M.
Benzinger D, et al.
Nat Commun. 2018 Aug 30;9(1):3521. doi: 10.1038/s41467-018-05882-2.
Nat Commun. 2018.
PMID: 30166548
Free PMC article.
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Synthetic gene networks recapitulate dynamic signal decoding and differential gene expression.
Benzinger D, Ovinnikov S, Khammash M.
Benzinger D, et al.
Cell Syst. 2022 May 18;13(5):353-364.e6. doi: 10.1016/j.cels.2022.02.004. Epub 2022 Mar 16.
Cell Syst. 2022.
PMID: 35298924
Free article.
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Optogenetic closed-loop feedback control of the unfolded protein response optimizes protein production.
Benisch M, Benzinger D, Kumar S, Hu H, Khammash M.
Benisch M, et al. Among authors: benzinger d.
Metab Eng. 2023 May;77:32-40. doi: 10.1016/j.ymben.2023.03.001. Epub 2023 Mar 11.
Metab Eng. 2023.
PMID: 36914087
Free article.
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Engineering light-inducible nuclear localization signals for precise spatiotemporal control of protein dynamics in living cells.
Niopek D, Benzinger D, Roensch J, Draebing T, Wehler P, Eils R, Di Ventura B.
Niopek D, et al. Among authors: benzinger d.
Nat Commun. 2014 Jul 14;5:4404. doi: 10.1038/ncomms5404.
Nat Commun. 2014.
PMID: 25019686
Free PMC article.
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Site-specific terminal and internal labeling of RNA by poly(A) polymerase tailing and copper-catalyzed or copper-free strain-promoted click chemistry.
Winz ML, Samanta A, Benzinger D, Jäschke A.
Winz ML, et al. Among authors: benzinger d.
Nucleic Acids Res. 2012 May;40(10):e78. doi: 10.1093/nar/gks062. Epub 2012 Feb 16.
Nucleic Acids Res. 2012.
PMID: 22344697
Free PMC article.
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