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Protoblock - A biological standard for formalin fixed samples.
Flores Bueso Y, Walker SP, Hogan G, Claesson MJ, Tangney M. Flores Bueso Y, et al. Among authors: claesson mj. Microbiome. 2020 Aug 22;8(1):122. doi: 10.1186/s40168-020-00901-1. Microbiome. 2020. PMID: 32828122 Free PMC article.
Biopsy bacterial signature can predict patient tissue malignancy.
Hogan G, Eckenberger J, Narayanen N, Walker SP, Claesson MJ, Corrigan M, O'Hanlon D, Tangney M. Hogan G, et al. Among authors: claesson mj. Sci Rep. 2021 Sep 17;11(1):18535. doi: 10.1038/s41598-021-98089-3. Sci Rep. 2021. PMID: 34535726 Free PMC article.
A clinician's guide to microbiome analysis.
Claesson MJ, Clooney AG, O'Toole PW. Claesson MJ, et al. Nat Rev Gastroenterol Hepatol. 2017 Oct;14(10):585-595. doi: 10.1038/nrgastro.2017.97. Epub 2017 Aug 9. Nat Rev Gastroenterol Hepatol. 2017. PMID: 28790452 Review.
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions.
Moreno-Indias I, Lahti L, Nedyalkova M, Elbere I, Roshchupkin G, Adilovic M, Aydemir O, Bakir-Gungor B, Santa Pau EC, D'Elia D, Desai MS, Falquet L, Gundogdu A, Hron K, Klammsteiner T, Lopes MB, Marcos-Zambrano LJ, Marques C, Mason M, May P, Pašić L, Pio G, Pongor S, Promponas VJ, Przymus P, Saez-Rodriguez J, Sampri A, Shigdel R, Stres B, Suharoschi R, Truu J, Truică CO, Vilne B, Vlachakis D, Yilmaz E, Zeller G, Zomer AL, Gómez-Cabrero D, Claesson MJ. Moreno-Indias I, et al. Among authors: claesson mj. Front Microbiol. 2021 Feb 22;12:635781. doi: 10.3389/fmicb.2021.635781. eCollection 2021. Front Microbiol. 2021. PMID: 33692771 Free PMC article.
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment.
Marcos-Zambrano LJ, Karaduzovic-Hadziabdic K, Loncar Turukalo T, Przymus P, Trajkovik V, Aasmets O, Berland M, Gruca A, Hasic J, Hron K, Klammsteiner T, Kolev M, Lahti L, Lopes MB, Moreno V, Naskinova I, Org E, Paciência I, Papoutsoglou G, Shigdel R, Stres B, Vilne B, Yousef M, Zdravevski E, Tsamardinos I, Carrillo de Santa Pau E, Claesson MJ, Moreno-Indias I, Truu J. Marcos-Zambrano LJ, et al. Among authors: claesson mj. Front Microbiol. 2021 Feb 19;12:634511. doi: 10.3389/fmicb.2021.634511. eCollection 2021. Front Microbiol. 2021. PMID: 33737920 Free PMC article. Review.
Strain level and comprehensive microbiome analysis in inflammatory bowel disease via multi-technology meta-analysis identifies key bacterial influencers of disease.
Ravichandar JD, Rutherford E, Chow CT, Han A, Yamamoto ML, Narayan N, Kaplan GG, Beck PL, Claesson MJ, Dabbagh K, Iwai S, DeSantis TZ. Ravichandar JD, et al. Among authors: claesson mj. Front Microbiol. 2022 Oct 14;13:961020. doi: 10.3389/fmicb.2022.961020. eCollection 2022. Front Microbiol. 2022. PMID: 36312950 Free PMC article.
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