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Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential.
Shi L, Tong W, Fang H, Scherf U, Han J, Puri RK, Frueh FW, Goodsaid FM, Guo L, Su Z, Han T, Fuscoe JC, Xu ZA, Patterson TA, Hong H, Xie Q, Perkins RG, Chen JJ, Casciano DA. Shi L, et al. Among authors: tong w. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S12. doi: 10.1186/1471-2105-6-S2-S12. BMC Bioinformatics. 2005. PMID: 16026597 Free PMC article.
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.
MAQC Consortium; Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ, de Longueville F, Kawasaki ES, Lee KY, Luo Y, Sun YA, Willey JC, Setterquist RA, Fischer GM, Tong W, Dragan YP, Dix DJ, Frueh FW, Goodsaid FM, Herman D, Jensen RV, Johnson CD, Lobenhofer EK, Puri RK, Schrf U, Thierry-Mieg J, Wang C, Wilson M, Wolber PK, Zhang L, Amur S, Bao W, Barbacioru CC, Lucas AB, Bertholet V, Boysen C, Bromley B, Brown D, Brunner A, Canales R, Cao XM, Cebula TA, Chen JJ, Cheng J, Chu TM, Chudin E, Corson J, Corton JC, Croner LJ, Davies C, Davison TS, Delenstarr G, Deng X, Dorris D, Eklund AC, Fan XH, Fang H, Fulmer-Smentek S, Fuscoe JC, Gallagher K, Ge W, Guo L, Guo X, Hager J, Haje PK, Han J, Han T, Harbottle HC, Harris SC, Hatchwell E, Hauser CA, Hester S, Hong H, Hurban P, Jackson SA, Ji H, Knight CR, Kuo WP, LeClerc JE, Levy S, Li QZ, Liu C, Liu Y, Lombardi MJ, Ma Y, Magnuson SR, Maqsodi B, McDaniel T, Mei N, Myklebost O, Ning B, Novoradovskaya N, Orr MS, Osborn TW, Papallo A, Patterson TA, Perkins RG, Peters EH, Peterson R, Philips KL, Pine PS, Pusztai L, Qian F, Ren H, Rosen M, Rosenzweig BA, Samaha RR, Schena M, Schroth GP, Shchegrova S, Smith DD, Staedtler… See abstract for full author list ➔ MAQC Consortium, et al. Among authors: tong w. Nat Biotechnol. 2006 Sep;24(9):1151-61. doi: 10.1038/nbt1239. Nat Biotechnol. 2006. PMID: 16964229 Free PMC article.
Rat toxicogenomic study reveals analytical consistency across microarray platforms.
Guo L, Lobenhofer EK, Wang C, Shippy R, Harris SC, Zhang L, Mei N, Chen T, Herman D, Goodsaid FM, Hurban P, Phillips KL, Xu J, Deng X, Sun YA, Tong W, Dragan YP, Shi L. Guo L, et al. Among authors: tong w. Nat Biotechnol. 2006 Sep;24(9):1162-9. doi: 10.1038/nbt1238. Nat Biotechnol. 2006. PMID: 17061323
Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.
Hong H, Shi L, Su Z, Ge W, Jones WD, Czika W, Miclaus K, Lambert CG, Vega SC, Zhang J, Ning B, Liu J, Green B, Xu L, Fang H, Perkins R, Lin SM, Jafari N, Park K, Ahn T, Chierici M, Furlanello C, Zhang L, Wolfinger RD, Goodsaid F, Tong W. Hong H, et al. Among authors: tong w. Pharmacogenomics J. 2010 Aug;10(4):364-74. doi: 10.1038/tpj.2010.24. Epub 2010 Apr 6. Pharmacogenomics J. 2010. PMID: 20368714 Free PMC article.
Two new ArrayTrack libraries for personalized biomedical research.
Xu J, Wise C, Varma V, Fang H, Ning B, Hong H, Tong W, Kaput J. Xu J, et al. Among authors: tong w. BMC Bioinformatics. 2010 Oct 7;11 Suppl 6(Suppl 6):S6. doi: 10.1186/1471-2105-11-S6-S6. BMC Bioinformatics. 2010. PMID: 20946617 Free PMC article.
2,706 results