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Kaposiform hemangioendothelioma and tufted angioma - (epi)genetic analysis including genome-wide methylation profiling.
Ann Diagn Pathol. 2020 Feb;44:151434. doi: 10.1016/j.anndiagpath.2019.151434. Epub 2019 Dec 10.
Ann Diagn Pathol. 2020.
PMID: 31887709
Free article.
DNA Methylation Profiling Identifies Distinct Clusters in Angiosarcomas.
Weidema ME, van de Geer E, Koelsche C, Desar IME, Kemmeren P, Hillebrandt-Roeffen MHS, Ho VKY, van der Graaf WTA, Versleijen-Jonkers YMH, von Deimling A, Flucke UE; PALGA Group.
Weidema ME, et al. Among authors: van de geer e.
Clin Cancer Res. 2020 Jan 1;26(1):93-100. doi: 10.1158/1078-0432.CCR-19-2180. Epub 2019 Sep 27.
Clin Cancer Res. 2020.
PMID: 31562204
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Improved Gene Fusion Detection in Childhood Cancer Diagnostics Using RNA Sequencing.
Hehir-Kwa JY, Koudijs MJ, Verwiel ETP, Kester LA, van Tuil M, Strengman E, Buijs A, Kranendonk MEG, Hiemcke-Jiwa LS, de Haas V, van de Geer E, de Leng W, van der Lugt J, Lijnzaad P, Holstege FCP, Kemmeren P, Tops BBJ.
Hehir-Kwa JY, et al. Among authors: van de geer e.
JCO Precis Oncol. 2022 Jan;6:e2000504. doi: 10.1200/PO.20.00504.
JCO Precis Oncol. 2022.
PMID: 35085008
Free PMC article.
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Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia.
Smits WK, Vermeulen C, Hagelaar R, Kimura S, Vroegindeweij EM, Buijs-Gladdines JGCAM, van de Geer E, Verstegen MJAM, Splinter E, van Reijmersdal SV, Buijs A, Galjart N, van Eyndhoven W, van Min M, Kuiper R, Kemmeren P, Mullighan CG, de Laat W, Meijerink JPP.
Smits WK, et al. Among authors: van de geer e.
Cell Rep. 2023 Apr 25;42(4):112373. doi: 10.1016/j.celrep.2023.112373. Epub 2023 Apr 14.
Cell Rep. 2023.
PMID: 37060567
Free PMC article.
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Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software.
Decamps C, Privé F, Bacher R, Jost D, Waguet A; HADACA consortium; Houseman EA, Lurie E, Lutsik P, Milosavljevic A, Scherer M, Blum MGB, Richard M.
Decamps C, et al.
BMC Bioinformatics. 2020 Jan 13;21(1):16. doi: 10.1186/s12859-019-3307-2.
BMC Bioinformatics. 2020.
PMID: 31931698
Free PMC article.
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