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Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4.
BMC Bioinformatics. 2019 Dec 17;20(1):722. doi: 10.1186/s12859-019-3277-4.
BMC Bioinformatics. 2019.
PMID: 31847808
Free PMC article.
Recommendations for performance optimizations when using GATK3.8 and GATK4.
Heldenbrand JR, Baheti S, Bockol MA, Drucker TM, Hart SN, Hudson ME, Iyer RK, Kalmbach MT, Kendig KI, Klee EW, Mattson NR, Wieben ED, Wiepert M, Wildman DE, Mainzer LS.
Heldenbrand JR, et al.
BMC Bioinformatics. 2019 Nov 8;20(1):557. doi: 10.1186/s12859-019-3169-7.
BMC Bioinformatics. 2019.
PMID: 31703611
Free PMC article.
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CROPSR: an automated platform for complex genome-wide CRISPR gRNA design and validation.
Müller Paul H, Istanto DD, Heldenbrand J, Hudson ME.
Müller Paul H, et al.
BMC Bioinformatics. 2022 Feb 16;23(1):74. doi: 10.1186/s12859-022-04593-2.
BMC Bioinformatics. 2022.
PMID: 35172714
Free PMC article.
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Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy.
Kendig KI, Baheti S, Bockol MA, Drucker TM, Hart SN, Heldenbrand JR, Hernaez M, Hudson ME, Kalmbach MT, Klee EW, Mattson NR, Ross CA, Taschuk M, Wieben ED, Wiepert M, Wildman DE, Mainzer LS.
Kendig KI, et al. Among authors: heldenbrand jr.
Front Genet. 2019 Aug 20;10:736. doi: 10.3389/fgene.2019.00736. eCollection 2019.
Front Genet. 2019.
PMID: 31481971
Free PMC article.
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Design considerations for workflow management systems use in production genomics research and the clinic.
Ahmed AE, Allen JM, Bhat T, Burra P, Fliege CE, Hart SN, Heldenbrand JR, Hudson ME, Istanto DD, Kalmbach MT, Kapraun GD, Kendig KI, Kendzior MC, Klee EW, Mattson N, Ross CA, Sharif SM, Venkatakrishnan R, Fadlelmola FM, Mainzer LS.
Ahmed AE, et al. Among authors: heldenbrand jr.
Sci Rep. 2021 Nov 4;11(1):21680. doi: 10.1038/s41598-021-99288-8.
Sci Rep. 2021.
PMID: 34737383
Free PMC article.
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Managing genomic variant calling workflows with Swift/T.
Ahmed AE, Heldenbrand J, Asmann Y, Fadlelmola FM, Katz DS, Kendig K, Kendzior MC, Li T, Ren Y, Rodriguez E, Weber MR, Wozniak JM, Zermeno J, Mainzer LS.
Ahmed AE, et al.
PLoS One. 2019 Jul 9;14(7):e0211608. doi: 10.1371/journal.pone.0211608. eCollection 2019.
PLoS One. 2019.
PMID: 31287816
Free PMC article.
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