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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, Cetin Atalay R, Zhang C, Hurto RL, Freddolino PL, Zhang Y, Bhat P, Supek F, Fernández JM, Gemovic B, Perovic VR, Davidović RS, Sumonja N, Veljkovic N, Asgari E, Mofrad MRK, Profiti G, Savojardo C, Martelli PL, Casadio R, Boecker F, Schoof H, Kahanda I, Thurlby N, McHardy AC, Renaux A, Saidi R, Gough J, Freitas AA, Antczak M, Fabris F, Wass MN, Hou J, Cheng J, Wang Z, Romero AE, Paccanaro A, Yang H, Goldberg T, Zhao C, Holm L, Törönen P, Medlar AJ, Zosa E, Borukhov I, Novikov I, Wilkins A, Lichtarge O, Chi PH, Tseng WC, Linial M, Rose PW, Dessimoz C, Vidulin V, Dzeroski S, Sillitoe I, Das S, Lees JG, Jones DT, Wan C, Cozzetto D, Fa R, Torres M, Warwick Vesztrocy A, Rodriguez JM, Tress ML, Frasca M, Notaro M, Grossi G, Petrini A, Re M, Valentini G, Mesiti M, Roche DB, Reeb J, Ritchie DW, Aridhi S, Alborzi SZ, Devignes MD, Koo DCE, Bonneau R, Gligorijević V, Barot M, Fang H, Toppo S, Lavezzo E, Falda M, Berselli M, Tosatto SCE, Carraro M, Piovesan D, Ur Rehman H, Mao Q, Zhang S, Vucetic S, Black GS, Jo D, Suh E, Dayton … See abstract for full author list ➔ Zhou N, et al. Among authors: jones dt. Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8. Genome Biol. 2019. PMID: 31744546 Free PMC article.
Targeting novel folds for structural genomics.
McGuffin LJ, Jones DT. McGuffin LJ, et al. Among authors: jones dt. Proteins. 2002 Jul 1;48(1):44-52. doi: 10.1002/prot.10129. Proteins. 2002. PMID: 12012336
The genomic threading database.
McGuffin LJ, Street S, Sørensen SA, Jones DT. McGuffin LJ, et al. Among authors: jones dt. Bioinformatics. 2004 Jan 1;20(1):131-2. doi: 10.1093/bioinformatics/btg387. Bioinformatics. 2004. PMID: 14693823
The DISOPRED server for the prediction of protein disorder.
Ward JJ, McGuffin LJ, Bryson K, Buxton BF, Jones DT. Ward JJ, et al. Among authors: jones dt. Bioinformatics. 2004 Sep 1;20(13):2138-9. doi: 10.1093/bioinformatics/bth195. Epub 2004 Mar 25. Bioinformatics. 2004. PMID: 15044227
962 results