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ProCoCoA: A quantitative approach for analyzing protein core composition.
Bottini S, Bernini A, De Chiara M, Garlaschelli D, Spiga O, Dioguardi M, Vannuccini E, Tramontano A, Niccolai N. Bottini S, et al. Among authors: niccolai n. Comput Biol Chem. 2013 Apr;43:29-34. doi: 10.1016/j.compbiolchem.2012.12.007. Epub 2012 Dec 31. Comput Biol Chem. 2013. PMID: 23333734
Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1,2-dioxygenase mutants at the base of rare disease Alkaptonuria.
Bernini A, Galderisi S, Spiga O, Bernardini G, Niccolai N, Manetti F, Santucci A. Bernini A, et al. Among authors: niccolai n. Comput Biol Chem. 2017 Oct;70:133-141. doi: 10.1016/j.compbiolchem.2017.08.008. Epub 2017 Aug 25. Comput Biol Chem. 2017. PMID: 28869836
Three-dimensional computation of atom depth in complex molecular structures.
Varrazzo D, Bernini A, Spiga O, Ciutti A, Chiellini S, Venditti V, Bracci L, Niccolai N. Varrazzo D, et al. Among authors: niccolai n. Bioinformatics. 2005 Jun 15;21(12):2856-60. doi: 10.1093/bioinformatics/bti444. Epub 2005 Apr 12. Bioinformatics. 2005. PMID: 15827080
91 results