Middendorf M - Search Results

1

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes.

Donath A, Jühling F, Al-Arab M, Bernhart SH, Reinhardt F, Stadler PF, Middendorf M, Bernt M. Donath A, et al. Among authors: middendorf m. Nucleic Acids Res. 2019 Nov 18;47(20):10543-10552. doi: 10.1093/nar/gkz833. Nucleic Acids Res. 2019. PMID: 31584075 Free PMC article.

2

Genome rearrangement based on reversals that preserve conserved intervals.

Bernt M, Merkle D, Middendorf M. Bernt M, et al. Among authors: middendorf m. IEEE/ACM Trans Comput Biol Bioinform. 2006 Jul-Sep;3(3):275-88. doi: 10.1109/TCBB.2006.38. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17048465

3

Using median sets for inferring phylogenetic trees.

Bernt M, Merkle D, Middendorf M. Bernt M, et al. Among authors: middendorf m. Bioinformatics. 2007 Jan 15;23(2):e129-35. doi: 10.1093/bioinformatics/btl300. Bioinformatics. 2007. PMID: 17237080

4

CREx: inferring genomic rearrangements based on common intervals.

Bernt M, Merkle D, Ramsch K, Fritzsch G, Perseke M, Bernhard D, Schlegel M, Stadler PF, Middendorf M. Bernt M, et al. Among authors: middendorf m. Bioinformatics. 2007 Nov 1;23(21):2957-8. doi: 10.1093/bioinformatics/btm468. Epub 2007 Sep 25. Bioinformatics. 2007. PMID: 17895271

5

Evolution of mitochondrial gene orders in echinoderms.

Perseke M, Fritzsch G, Ramsch K, Bernt M, Merkle D, Middendorf M, Bernhard D, Stadler PF, Schlegel M. Perseke M, et al. Among authors: middendorf m. Mol Phylogenet Evol. 2008 May;47(2):855-64. doi: 10.1016/j.ympev.2007.11.034. Epub 2007 Dec 15. Mol Phylogenet Evol. 2008. PMID: 18280182

6

Folding kinetics of large RNAs.

Geis M, Flamm C, Wolfinger MT, Tanzer A, Hofacker IL, Middendorf M, Mandl C, Stadler PF, Thurner C. Geis M, et al. Among authors: middendorf m. J Mol Biol. 2008 May 23;379(1):160-73. doi: 10.1016/j.jmb.2008.02.064. Epub 2008 Mar 6. J Mol Biol. 2008. PMID: 18440024

7

Solving the preserving reversal median problem.

Bernt M, Merkle D, Middendorf M. Bernt M, et al. Among authors: middendorf m. IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):332-47. doi: 10.1109/TCBB.2008.39. IEEE/ACM Trans Comput Biol Bioinform. 2008. PMID: 18670038

8

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements.

Jühling F, Pütz J, Bernt M, Donath A, Middendorf M, Florentz C, Stadler PF. Jühling F, et al. Among authors: middendorf m. Nucleic Acids Res. 2012 Apr;40(7):2833-45. doi: 10.1093/nar/gkr1131. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22139921 Free PMC article.

9

A method for computing an inventory of metazoan mitochondrial gene order rearrangements.

Bernt M, Middendorf M. Bernt M, et al. Among authors: middendorf m. BMC Bioinformatics. 2011 Oct 5;12 Suppl 9(Suppl 9):S6. doi: 10.1186/1471-2105-12-S9-S6. BMC Bioinformatics. 2011. PMID: 22151086 Free PMC article.

10

MITOS: improved de novo metazoan mitochondrial genome annotation.

Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. Bernt M, et al. Among authors: middendorf m. Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7. Mol Phylogenet Evol. 2013. PMID: 22982435

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