Patrignani A - Search Results

1

Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars.

Kuon JE, Qi W, Schläpfer P, Hirsch-Hoffmann M, von Bieberstein PR, Patrignani A, Poveda L, Grob S, Keller M, Shimizu-Inatsugi R, Grossniklaus U, Vanderschuren H, Gruissem W. Kuon JE, et al. Among authors: patrignani a. BMC Biol. 2019 Sep 18;17(1):75. doi: 10.1186/s12915-019-0697-6. BMC Biol. 2019. PMID: 31533702 Free PMC article.

2

The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features.

Qi W, Lim YW, Patrignani A, Schläpfer P, Bratus-Neuenschwander A, Grüter S, Chanez C, Rodde N, Prat E, Vautrin S, Fustier MA, Pratas D, Schlapbach R, Gruissem W. Qi W, et al. Among authors: patrignani a. Gigascience. 2022 Mar 24;11:giac028. doi: 10.1093/gigascience/giac028. Gigascience. 2022. PMID: 35333302 Free PMC article.

3

A new full-length circular DNA sequencing method for viral-sized genomes reveals that RNAi transgenic plants provoke a shift in geminivirus populations in the field.

Mehta D, Hirsch-Hoffmann M, Were M, Patrignani A, Zaidi SS, Were H, Gruissem W, Vanderschuren H. Mehta D, et al. Among authors: patrignani a. Nucleic Acids Res. 2019 Jan 25;47(2):e9. doi: 10.1093/nar/gky914. Nucleic Acids Res. 2019. PMID: 30357413 Free PMC article.

4

Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop.

Hatakeyama M, Aluri S, Balachadran MT, Sivarajan SR, Patrignani A, Grüter S, Poveda L, Shimizu-Inatsugi R, Baeten J, Francoijs KJ, Nataraja KN, Reddy YAN, Phadnis S, Ravikumar RL, Schlapbach R, Sreeman SM, Shimizu KK. Hatakeyama M, et al. Among authors: patrignani a. DNA Res. 2018 Feb 1;25(1):39-47. doi: 10.1093/dnares/dsx036. DNA Res. 2018. PMID: 28985356 Free PMC article.

5

Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays.

Müller M, Patrignani A, Rehrauer H, Gruissem W, Hennig L. Müller M, et al. Among authors: patrignani a. Plant Methods. 2012 Jun 13;8(1):18. doi: 10.1186/1746-4811-8-18. Plant Methods. 2012. PMID: 22694760 Free PMC article.

6

AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.

Rehrauer H, Aquino C, Gruissem W, Henz SR, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombauts S, Shu H, Van de Peer Y, Vuylsteke M, Weigel D, Zeller G, Hennig L. Rehrauer H, et al. Among authors: patrignani a. Plant Physiol. 2010 Feb;152(2):487-99. doi: 10.1104/pp.109.150185. Epub 2009 Dec 23. Plant Physiol. 2010. PMID: 20032078 Free PMC article.

7

New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies.

Qi W, Colarusso A, Olombrada M, Parrilli E, Patrignani A, Tutino ML, Toll-Riera M. Qi W, et al. Among authors: patrignani a. Sci Rep. 2019 Nov 11;9(1):16444. doi: 10.1038/s41598-019-52832-z. Sci Rep. 2019. PMID: 31712730 Free PMC article.

8

Highly sensitive, non-invasive detection of colorectal cancer mutations using single molecule, third generation sequencing.

Russo G, Patrignani A, Poveda L, Hoehn F, Scholtka B, Schlapbach R, Garvin AM. Russo G, et al. Among authors: patrignani a. Appl Transl Genom. 2015 Oct 16;7:32-9. doi: 10.1016/j.atg.2015.08.006. eCollection 2015 Dec. Appl Transl Genom. 2015. PMID: 27054083 Free PMC article.

9

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.

Schmid M, Frei D, Patrignani A, Schlapbach R, Frey JE, Remus-Emsermann MNP, Ahrens CH. Schmid M, et al. Among authors: patrignani a. Nucleic Acids Res. 2018 Sep 28;46(17):8953-8965. doi: 10.1093/nar/gky726. Nucleic Acids Res. 2018. PMID: 30137508 Free PMC article.

10

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations.

Giallonardo FD, Töpfer A, Rey M, Prabhakaran S, Duport Y, Leemann C, Schmutz S, Campbell NK, Joos B, Lecca MR, Patrignani A, Däumer M, Beisel C, Rusert P, Trkola A, Günthard HF, Roth V, Beerenwinkel N, Metzner KJ. Giallonardo FD, et al. Among authors: patrignani a. Nucleic Acids Res. 2014 Aug;42(14):e115. doi: 10.1093/nar/gku537. Epub 2014 Jun 27. Nucleic Acids Res. 2014. PMID: 24972832 Free PMC article.

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