Nam K - Search Results

1

Insights into the origin of the high energy-conversion efficiency of F₁-ATPase.

Nam K, Karplus M. Nam K, et al. Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):15924-15929. doi: 10.1073/pnas.1906816116. Epub 2019 Jul 24. Proc Natl Acad Sci U S A. 2019. PMID: 31341091 Free PMC article.

2

Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM.

Qi Y, Spong MC, Nam K, Karplus M, Verdine GL. Qi Y, et al. Among authors: nam k. J Biol Chem. 2010 Jan 8;285(2):1468-78. doi: 10.1074/jbc.M109.069799. Epub 2009 Nov 4. J Biol Chem. 2010. PMID: 19889642 Free PMC article.

3

Analysis of an anomalous mutant of MutM DNA glycosylase leads to new insights into the catalytic mechanism.

Nam K, Verdine GL, Karplus M. Nam K, et al. J Am Chem Soc. 2009 Dec 30;131(51):18208-9. doi: 10.1021/ja907544b. J Am Chem Soc. 2009. PMID: 19961158 Free PMC article.

4

Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.

Qi Y, Spong MC, Nam K, Banerjee A, Jiralerspong S, Karplus M, Verdine GL. Qi Y, et al. Among authors: nam k. Nature. 2009 Dec 10;462(7274):762-6. doi: 10.1038/nature08561. Nature. 2009. PMID: 20010681 Free PMC article.

5

Unsuspected pathway of the allosteric transition in hemoglobin.

Fischer S, Olsen KW, Nam K, Karplus M. Fischer S, et al. Among authors: nam k. Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5608-13. doi: 10.1073/pnas.1011995108. Epub 2011 Mar 17. Proc Natl Acad Sci U S A. 2011. PMID: 21415366 Free PMC article.

6

Strandwise translocation of a DNA glycosylase on undamaged DNA.

Qi Y, Nam K, Spong MC, Banerjee A, Sung RJ, Zhang M, Karplus M, Verdine GL. Qi Y, et al. Among authors: nam k. Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1086-91. doi: 10.1073/pnas.1111237108. Epub 2012 Jan 4. Proc Natl Acad Sci U S A. 2012. PMID: 22219368 Free PMC article.

7

Enforced presentation of an extrahelical guanine to the lesion recognition pocket of human 8-oxoguanine glycosylase, hOGG1.

Crenshaw CM, Nam K, Oo K, Kutchukian PS, Bowman BR, Karplus M, Verdine GL. Crenshaw CM, et al. Among authors: nam k. J Biol Chem. 2012 Jul 20;287(30):24916-28. doi: 10.1074/jbc.M111.316497. Epub 2012 Apr 16. J Biol Chem. 2012. PMID: 22511791 Free PMC article.

8

Trapping the ATP binding state leads to a detailed understanding of the F1-ATPase mechanism.

Nam K, Pu J, Karplus M. Nam K, et al. Proc Natl Acad Sci U S A. 2014 Dec 16;111(50):17851-6. doi: 10.1073/pnas.1419486111. Epub 2014 Dec 1. Proc Natl Acad Sci U S A. 2014. PMID: 25453082 Free PMC article.

9

A Simple and Accurate Method To Calculate Free Energy Profiles and Reaction Rates from Restrained Molecular Simulations of Diffusive Processes.

Ovchinnikov V, Nam K, Karplus M. Ovchinnikov V, et al. Among authors: nam k. J Phys Chem B. 2016 Aug 25;120(33):8457-72. doi: 10.1021/acs.jpcb.6b02139. Epub 2016 May 26. J Phys Chem B. 2016. PMID: 27135391

10

The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.

Shigdel UK, Ovchinnikov V, Lee SJ, Shih JA, Karplus M, Nam K, Verdine GL. Shigdel UK, et al. Among authors: nam k. Nat Commun. 2020 Sep 7;11(1):4437. doi: 10.1038/s41467-020-18290-2. Nat Commun. 2020. PMID: 32895378 Free PMC article.

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