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PySeqLab: an open source Python package for sequence labeling and segmentation.
Allam A, Krauthammer M. Allam A, et al. Bioinformatics. 2017 Nov 1;33(21):3497-3499. doi: 10.1093/bioinformatics/btx451. Bioinformatics. 2017. PMID: 29036277 Free PMC article.
MOTIVATION: Text and genomic data are composed of sequential tokens, such as words and nucleotides that give rise to higher order syntactic constructs. In this work, we aim at providing a comprehensive Python library implementing conditional random fields (CRFs), a …
MOTIVATION: Text and genomic data are composed of sequential tokens, such as words and nucleotides that give rise to higher order syntactic …
A novel anti-melanoma SRC-family kinase inhibitor.
Halaban R, Bacchiocchi A, Straub R, Cao J, Sznol M, Narayan D, Allam A, Krauthammer M, Mansour TS. Halaban R, et al. Among authors: allam a. Oncotarget. 2019 Mar 19;10(23):2237-2251. doi: 10.18632/oncotarget.26787. eCollection 2019 Mar 19. Oncotarget. 2019. PMID: 31040916 Free PMC article.
Reducing Annotation Burden Through Multimodal Learning.
Lopez K, Fodeh SJ, Allam A, Brandt CA, Krauthammer M. Lopez K, et al. Among authors: allam a. Front Big Data. 2020 Jun 2;3:19. doi: 10.3389/fdata.2020.00019. eCollection 2020. Front Big Data. 2020. PMID: 33693393 Free PMC article.
How to Synchronize Longitudinal Patient Data With the Underlying Disease Progression: A Pilot Study Using the Biomarker CRP for Timing COVID-19.
Maibach MA, Allam A, Hilty MP, Perez Gonzalez NA, Buehler PK, Wendel Garcia PD, Brugger SD, Ganter CC; CoViD-19 ICU-Research Group Zurich; RISC-19-ICU Investigators; Krauthammer M, Schuepbach RA, Bartussek J. Maibach MA, et al. Among authors: allam a. Front Med (Lausanne). 2021 Jul 8;8:607594. doi: 10.3389/fmed.2021.607594. eCollection 2021. Front Med (Lausanne). 2021. PMID: 34307391 Free PMC article.
694 results