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Evaluating riboswitch optimality.
Wayment-Steele H, Wu M, Gotrik M, Das R. Wayment-Steele H, et al. Among authors: das r. Methods Enzymol. 2019;623:417-450. doi: 10.1016/bs.mie.2019.05.028. Epub 2019 Jun 18. Methods Enzymol. 2019. PMID: 31239056 Free PMC article.
Modeling complex RNA tertiary folds with Rosetta.
Cheng CY, Chou FC, Das R. Cheng CY, et al. Among authors: das r. Methods Enzymol. 2015;553:35-64. doi: 10.1016/bs.mie.2014.10.051. Epub 2015 Feb 12. Methods Enzymol. 2015. PMID: 25726460
Principles for Predicting RNA Secondary Structure Design Difficulty.
Anderson-Lee J, Fisker E, Kosaraju V, Wu M, Kong J, Lee J, Lee M, Zada M, Treuille A, Das R; Eterna Players. Anderson-Lee J, et al. Among authors: das r. J Mol Biol. 2016 Feb 27;428(5 Pt A):748-757. doi: 10.1016/j.jmb.2015.11.013. Epub 2016 Feb 17. J Mol Biol. 2016. PMID: 26902426 Free PMC article.
Structure and ligand binding of the glutamine-II riboswitch.
Huang L, Wang J, Watkins AM, Das R, Lilley DMJ. Huang L, et al. Among authors: das r. Nucleic Acids Res. 2019 Aug 22;47(14):7666-7675. doi: 10.1093/nar/gkz539. Nucleic Acids Res. 2019. PMID: 31216023 Free PMC article.
Using Rosetta for RNA homology modeling.
Watkins AM, Rangan R, Das R. Watkins AM, et al. Among authors: das r. Methods Enzymol. 2019;623:177-207. doi: 10.1016/bs.mie.2019.05.026. Epub 2019 Jun 11. Methods Enzymol. 2019. PMID: 31239046 Free PMC article.
Automated Design of Diverse Stand-Alone Riboswitches.
Wu MJ, Andreasson JOL, Kladwang W, Greenleaf W, Das R. Wu MJ, et al. Among authors: das r. ACS Synth Biol. 2019 Aug 16;8(8):1838-1846. doi: 10.1021/acssynbio.9b00142. Epub 2019 Jul 29. ACS Synth Biol. 2019. PMID: 31298841 Free PMC article.
Computational design of three-dimensional RNA structure and function.
Yesselman JD, Eiler D, Carlson ED, Gotrik MR, d'Aquino AE, Ooms AN, Kladwang W, Carlson PD, Shi X, Costantino DA, Herschlag D, Lucks JB, Jewett MC, Kieft JS, Das R. Yesselman JD, et al. Among authors: das r. Nat Nanotechnol. 2019 Sep;14(9):866-873. doi: 10.1038/s41565-019-0517-8. Epub 2019 Aug 19. Nat Nanotechnol. 2019. PMID: 31427748 Free PMC article.
3,549 results