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Automated visualization of rule-based models.
Sekar JAP, Tapia JJ, Faeder JR. Sekar JAP, et al. Among authors: faeder jr. PLoS Comput Biol. 2017 Nov 13;13(11):e1005857. doi: 10.1371/journal.pcbi.1005857. eCollection 2017 Nov. PLoS Comput Biol. 2017. PMID: 29131816 Free PMC article.
Translational systems approaches to the biology of inflammation and healing.
Vodovotz Y, Constantine G, Faeder J, Mi Q, Rubin J, Bartels J, Sarkar J, Squires RH Jr, Okonkwo DO, Gerlach J, Zamora R, Luckhart S, Ermentrout B, An G. Vodovotz Y, et al. Among authors: faeder j. Immunopharmacol Immunotoxicol. 2010 Jun;32(2):181-95. doi: 10.3109/08923970903369867. Immunopharmacol Immunotoxicol. 2010. PMID: 20170421 Free PMC article. Review.
MCell-R: A Particle-Resolution Network-Free Spatial Modeling Framework.
Tapia JJ, Saglam AS, Czech J, Kuczewski R, Bartol TM, Sejnowski TJ, Faeder JR. Tapia JJ, et al. Among authors: faeder jr. Methods Mol Biol. 2019;1945:203-229. doi: 10.1007/978-1-4939-9102-0_9. Methods Mol Biol. 2019. PMID: 30945248 Free PMC article.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Among authors: faeder jr. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
82 results