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Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.
Barylski J, Enault F, Dutilh BE, Schuller MB, Edwards RA, Gillis A, Klumpp J, Knezevic P, Krupovic M, Kuhn JH, Lavigne R, Oksanen HM, Sullivan MB, Jang HB, Simmonds P, Aiewsakun P, Wittmann J, Tolstoy I, Brister JR, Kropinski AM, Adriaenssens EM. Barylski J, et al. Among authors: dutilh be. Syst Biol. 2020 Jan 1;69(1):110-123. doi: 10.1093/sysbio/syz036. Syst Biol. 2020. PMID: 31127947 Free PMC article.
Genome-wide study of the defective sucrose fermenter strain of Vibrio cholerae from the Latin American cholera epidemic.
Garza DR, Thompson CC, Loureiro EC, Dutilh BE, Inada DT, Junior EC, Cardoso JF, Nunes MR, de Lima CP, Silvestre RV, Nunes KN, Santos EC, Edwards RA, Vicente AC, de Sá Morais LL. Garza DR, et al. Among authors: dutilh be. PLoS One. 2012;7(5):e37283. doi: 10.1371/journal.pone.0037283. Epub 2012 May 25. PLoS One. 2012. PMID: 22662140 Free PMC article.
Combining de novo and reference-guided assembly with scaffold_builder.
Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Silva GG, et al. Among authors: dutilh be. Source Code Biol Med. 2013 Nov 22;8(1):23. doi: 10.1186/1751-0473-8-23. Source Code Biol Med. 2013. PMID: 24267787 Free PMC article.
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions.
Dutilh BE, Thompson CC, Vicente AC, Marin MA, Lee C, Silva GG, Schmieder R, Andrade BG, Chimetto L, Cuevas D, Garza DR, Okeke IN, Aboderin AO, Spangler J, Ross T, Dinsdale EA, Thompson FL, Harkins TT, Edwards RA. Dutilh BE, et al. BMC Genomics. 2014 Aug 5;15(1):654. doi: 10.1186/1471-2164-15-654. BMC Genomics. 2014. PMID: 25096633 Free PMC article.
Microbial taxonomy in the post-genomic era: rebuilding from scratch?
Thompson CC, Amaral GR, Campeão M, Edwards RA, Polz MF, Dutilh BE, Ussery DW, Sawabe T, Swings J, Thompson FL. Thompson CC, et al. Among authors: dutilh be. Arch Microbiol. 2015 Apr;197(3):359-70. doi: 10.1007/s00203-014-1071-2. Epub 2014 Dec 23. Arch Microbiol. 2015. PMID: 25533848
Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum.
Matthews TD, Schmieder R, Silva GG, Busch J, Cassman N, Dutilh BE, Green D, Matlock B, Heffernan B, Olsen GJ, Farris Hanna L, Schifferli DM, Maloy S, Dinsdale EA, Edwards RA. Matthews TD, et al. Among authors: dutilh be. PLoS One. 2015 Jun 3;10(6):e0126883. doi: 10.1371/journal.pone.0126883. eCollection 2015. PLoS One. 2015. PMID: 26039056 Free PMC article.
167 results