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DeePromoter: Robust Promoter Predictor Using Deep Learning.
Front Genet. 2019 Apr 5;10:286. doi: 10.3389/fgene.2019.00286. eCollection 2019.
Front Genet. 2019.
PMID: 31024615
Free PMC article.
Deep Splicing Code: Classifying Alternative Splicing Events Using Deep Learning.
Louadi Z, Oubounyt M, Tayara H, Chong KT.
Louadi Z, et al.
Genes (Basel). 2019 Aug 1;10(8):587. doi: 10.3390/genes10080587.
Genes (Basel). 2019.
PMID: 31374967
Free PMC article.
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Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases.
Louadi Z, Elkjaer ML, Klug M, Lio CT, Fenn A, Illes Z, Bongiovanni D, Baumbach J, Kacprowski T, List M, Tsoy O.
Louadi Z, et al.
Genome Biol. 2021 Dec 2;22(1):327. doi: 10.1186/s13059-021-02538-1.
Genome Biol. 2021.
PMID: 34857024
Free PMC article.
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DIGGER: exploring the functional role of alternative splicing in protein interactions.
Louadi Z, Yuan K, Gress A, Tsoy O, Kalinina OV, Baumbach J, Kacprowski T, List M.
Louadi Z, et al.
Nucleic Acids Res. 2021 Jan 8;49(D1):D309-D318. doi: 10.1093/nar/gkaa768.
Nucleic Acids Res. 2021.
PMID: 32976589
Free PMC article.
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The AIMe registry for artificial intelligence in biomedical research.
Matschinske J, Alcaraz N, Benis A, Golebiewski M, Grimm DG, Heumos L, Kacprowski T, Lazareva O, List M, Louadi Z, Pauling JK, Pfeifer N, Röttger R, Schwämmle V, Sturm G, Traverso A, Van Steen K, de Freitas MV, Villalba Silva GC, Wee L, Wenke NK, Zanin M, Zolotareva O, Baumbach J, Blumenthal DB.
Matschinske J, et al. Among authors: louadi z.
Nat Methods. 2021 Oct;18(10):1128-1131. doi: 10.1038/s41592-021-01241-0.
Nat Methods. 2021.
PMID: 34433960
Free article.
No abstract available.
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Alternative splicing impacts microRNA regulation within coding regions.
Hackl LM, Fenn A, Louadi Z, Baumbach J, Kacprowski T, List M, Tsoy O.
Hackl LM, et al. Among authors: louadi z.
NAR Genom Bioinform. 2023 Sep 11;5(3):lqad081. doi: 10.1093/nargab/lqad081. eCollection 2023 Sep.
NAR Genom Bioinform. 2023.
PMID: 37705830
Free PMC article.
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Alternative splicing analysis benchmark with DICAST.
Fenn A, Tsoy O, Faro T, Rößler FLM, Dietrich A, Kersting J, Louadi Z, Lio CT, Völker U, Baumbach J, Kacprowski T, List M.
Fenn A, et al. Among authors: louadi z.
NAR Genom Bioinform. 2023 May 30;5(2):lqad044. doi: 10.1093/nargab/lqad044. eCollection 2023 Jun.
NAR Genom Bioinform. 2023.
PMID: 37260511
Free PMC article.
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Systematic analysis of alternative splicing in time course data using Spycone.
Lio CT, Grabert G, Louadi Z, Fenn A, Baumbach J, Kacprowski T, List M, Tsoy O.
Lio CT, et al. Among authors: louadi z.
Bioinformatics. 2023 Jan 1;39(1):btac846. doi: 10.1093/bioinformatics/btac846.
Bioinformatics. 2023.
PMID: 36579860
Free PMC article.
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